X-Ray Diffraction data from Interleukin-12 recepter subunit beta-1, source of 6WDP structure

Data DOI: 10.15785/SBGRID/828 | ID: 828

Publication DOI: https://doi.org/10.1016/j.cell.2021.01.018

6WDP Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Garcia Laboratory, Stanford University

Release Date: April 27, 2021

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/828

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/828 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/828 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/828 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/828 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 828 ; shasum -c files.sha'

Storage requirements: 16G

Biological Sample:

Interleukin-12 recepter subunit beta-1

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

SSRL beamline 12-2

Data Creation Date:

Jan. 22, 2012

Related Datasets:

827


Cite this Dataset

Jude, KM; Garcia, KC; Spangler, JB; Thomas, C; Garcia, K. 2021. "X-Ray Diffraction data for: Interleukin-12 recepter subunit beta-1. PDB Code 6WDP", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/828.

Download Citation

Dataset Description

SeMet dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Kevin M JudeDepositorHHMI/Stanford University
K C GarciaHHMI/Stanford University
Jamie B SpanglerStanford University
Christoph ThomasData CollectorStanford University
K. Christopher GarciaPIStanford University

Reprocessing Instructions

peak (E1) 0.9792 Ang inflection (E3) 0.9792 Ang remote (E2) 0.9184 Ang

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

WAVE3 - 0.9798

Sweep:

SWEEP18

Files:

/programs/datagrid/828/ds5_5_E3_#####.cbf

Images:

1201 - 1350

Beam:

(217.32, 211.82) -> (217.32, 211.65)

Distance:

500.0 -> 500.32

Spacegroup:

P 41 21 2

For AUTOMATIC/DEFAULT/WAVE3:

ALL LOW HIGH
High resolution limit 2.35 6.36 2.35
Low resolution limit 30.39 30.39 2.39
Completeness 99.4 100.0 85.8
Multiplicity 12.2 10.4 6.2
I/sigma 22.4 61.2 1.2
Rmerge 0.078 0.025 1.396
CC half 0.999 1.0 0.4
Anomalous completeness 98.7 99.8 77.1
Anomalous multiplicity 6.8 6.8 6.8
Cell 55.69 55.69 181.3 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

WAVE3 - 0.9798

Sweep:

SWEEP18

Files:

/programs/datagrid/828/ds5_5_E3_#####.cbf

Images:

1201 - 1350

Beam:

(217.32, 211.82) -> (217.32, 211.66)

Distance:

500.0 -> 500.15

Spacegroup:

P 41 21 2

For AUTOMATIC/DEFAULT/WAVE3:

ALL LOW HIGH
High resolution limit 2.37 6.43 2.37
Low resolution limit 40.95 40.96 2.41
Completeness 99.8 100.0 94.9
Multiplicity 12.3 10.4 10.2
I/sigma 22.8 60.9 1.6
Rmerge 0.078 0.025 1.37
CC half 0.999 1.0 0.556
Anomalous completeness 99.7 99.7 96.0
Anomalous multiplicity 6.9 6.9 6.9
Cell 55.69 55.69 181.31 90.0 90.0 90.0

Version:

version unreported

Reprocessing failed.


License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.