Data DOI: 10.15785/SBGRID/828 | ID: 828
Publication DOI: https://doi.org/10.1016/j.cell.2021.01.018
6WDP Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Garcia Laboratory, Stanford University
Release Date: 27 Apr 2021
1. If this dataset is locally available, it should be accessable at /programs/datagrid/828
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/828 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/828 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/828 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/828 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 828 ; shasum -c files.sha'
Storage requirements: 16G
Biological Sample:
Interleukin-12 recepter subunit beta-1
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
SSRL beamline 12-2
Data Creation Date:
22 Jan 2012
Related Datasets:
Jude, KM; Garcia, KC; Spangler, JB; Thomas, C; Garcia, K. 2021. "X-Ray Diffraction data for: Interleukin-12 recepter subunit beta-1. PDB Code 6WDP", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/828.
SeMet dataset
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Kevin M Jude | Depositor | HHMI/Stanford University |
| K C Garcia | HHMI/Stanford University | |
| Jamie B Spangler | Stanford University | |
| Christoph Thomas | Data Collector | Stanford University |
| K. Christopher Garcia | PI | Stanford University |
peak (E1) 0.9792 Ang inflection (E3) 0.9792 Ang remote (E2) 0.9184 Ang
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
WAVE3 - 0.9798
Sweep:
SWEEP18
Files:
/programs/datagrid/828/ds5_5_E3_#####.cbf
Images:
1201 - 1350
Beam:
(217.32, 211.82) -> (217.32, 211.65)
Distance:
500.0 -> 500.32
Spacegroup:
P 41 21 2
For AUTOMATIC/DEFAULT/WAVE3:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.35 | 6.36 | 2.35 |
| Low resolution limit | 30.39 | 30.39 | 2.39 |
| Completeness | 99.4 | 100.0 | 85.8 |
| Multiplicity | 12.2 | 10.4 | 6.2 |
| I/sigma | 22.4 | 61.2 | 1.2 |
| Rmerge | 0.078 | 0.025 | 1.396 |
| CC half | 0.999 | 1.0 | 0.4 |
| Anomalous completeness | 98.7 | 99.8 | 77.1 |
| Anomalous multiplicity | 6.8 | 6.8 | 6.8 |
| Cell | 55.69 | 55.69 | 181.3 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
WAVE3 - 0.9798
Sweep:
SWEEP18
Files:
/programs/datagrid/828/ds5_5_E3_#####.cbf
Images:
1201 - 1350
Beam:
(217.32, 211.82) -> (217.32, 211.66)
Distance:
500.0 -> 500.15
Spacegroup:
P 41 21 2
For AUTOMATIC/DEFAULT/WAVE3:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.37 | 6.43 | 2.37 |
| Low resolution limit | 40.95 | 40.96 | 2.41 |
| Completeness | 99.8 | 100.0 | 94.9 |
| Multiplicity | 12.3 | 10.4 | 10.2 |
| I/sigma | 22.8 | 60.9 | 1.6 |
| Rmerge | 0.078 | 0.025 | 1.37 |
| CC half | 0.999 | 1.0 | 0.556 |
| Anomalous completeness | 99.7 | 99.7 | 96.0 |
| Anomalous multiplicity | 6.9 | 6.9 | 6.9 |
| Cell | 55.69 | 55.69 | 181.31 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Reprocessing failed.
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
