X-Ray Diffraction data from Interleukin-12 recepter subunit beta-1, source of 6WDP structure

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Data DOI: 10.15785/SBGRID/827 | ID: 827

Publication DOI: 10.1016/j.cell.2021.01.018

6WDP Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Garcia Laboratory, Stanford University

Release Date: 27 Apr 2021

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/827

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/827 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/827 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/827 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/827 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 827 ; shasum -c files.sha'

Storage requirements: 2.7G

Biological Sample:

Interleukin-12 recepter subunit beta-1

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

ALS 8.2.2

Data Creation Date:

9 Sep 2011

Related Datasets:

828


Cite this Dataset

Jude, KM; Garcia, KC; Spangler, JB; Thomas, C; Garcia, K. 2021. "X-Ray Diffraction data for: Interleukin-12 recepter subunit beta-1. PDB Code 6WDP", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/827.

Download Citation

Dataset Description

Native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Kevin M JudeDepositorHHMI/Stanford University
K C GarciaHHMI/Stanford University
Jamie B SpanglerStanford University
Christoph ThomasData CollectorStanford University
K. Christopher GarciaPIStanford University

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

xia2 -2d

xia2 -3d

xia2 -3dii

xia2 -dials
/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=3d /programs/datagrid//827/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=3dii /programs/datagrid//827/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.0

Sweep:

SWEEP1

Files:

/programs/datagrid/827/Xtal5_9_###.img

Images:

1 - 152

Beam:

(154.74, 167.66) -> (154.74, 167.64)

Distance:

300.0 -> 298.06

Spacegroup:

P 4 2 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.51 4.1 1.51
Low resolution limit 41.58 41.59 1.54
Completeness 67.8 99.0 1.5
Multiplicity 8.2 8.1 1.1
I/sigma 1.1 2.7 0.0
Rmerge 0.675 0.587 0.0
CC half 0.673 0.521 -0.88
Anomalous completeness 62.3 96.7 0.1
Anomalous multiplicity 4.6 4.6 4.6
Cell 55.72 55.72 187.36 90.0 90.0 90.0
/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=dials /programs/datagrid//827/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.


License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.