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X-Ray Diffraction data from Mouse surfactant protein B, N-terminal domain (K46E/R51E mutant) with bound lipid, source of 6VZD structure

Data DOI: 10.15785/SBGRID/771 | ID: 771

Publication DOI: 10.1016/j.molcel.2020.10.042

6VZD Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Rapoport Laboratory, Harvard Medical School

Release Date: Nov. 17, 2020

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/771

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/771 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/771 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/771 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/771 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 771 ; shasum -c files.sha'

Storage requirements: 41G

Biological Sample:

Mouse surfactant protein B, N-terminal domain (K46E/R51E mutant) with bound lipid

Dataset Type:

X-Ray Diffraction

Subject Composition:

Ligand, Protein

Collection Facility:

APS 24-ID-E

Data Creation Date:

Dec. 10, 2019

Related Datasets:

770, 769, 768


Cite this Dataset

Bodnar, NO; Wu, X; Rapoport, TA. 2020. "X-Ray Diffraction data for: Mouse surfactant protein B, N-terminal domain (K46E/R51E mutant) with bound lipid. PDB Code 6VZD", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/771.

Download Citation

Dataset Description

Native dataset #4 of 4 that were merged for structure solution

Project Members

Name Additional Roles Affiliation While Working on the Project
Nicholas O BodnarDepositorHMS
Tom A RapoportHMS
Xudong WuData CollectorHMS
Tom RapoportPIHarvard Medical School

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97918

Sweep:

SWEEP1

Files:

/programs/datagrid/771/RAP_001_7_4_1_######.cbf

Images:

1 - 2400

Beam:

(164.88, 154.72) -> (164.88, 154.71)

Distance:

250.0 -> 250.33

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.74 4.72 1.74
Low resolution limit 39.55 39.56 1.77
Completeness 99.5 100.0 98.4
Multiplicity 14.1 13.5 14.3
I/sigma 14.9 58.1 0.2
Rmerge 0.064 0.03 4.714
CC half 1.0 1.0 0.344
Anomalous completeness 99.4 99.9 97.9
Anomalous multiplicity 7.2 7.2 7.2
Cell 49.76 66.11 59.61 90.0 97.25 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97918

Sweep:

SWEEP1

Files:

/programs/datagrid/771/RAP_001_7_4_1_######.cbf

Images:

1 - 2400

Beam:

(164.88, 154.72) -> (164.88, 154.71)

Distance:

250.0 -> 250.4

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.74 4.72 1.74
Low resolution limit 59.13 59.17 1.77
Completeness 99.5 100.0 98.4
Multiplicity 14.1 13.4 14.3
I/sigma 14.9 58.0 0.2
Rmerge 0.064 0.03 4.718
CC half 1.0 1.0 0.332
Anomalous completeness 99.3 99.9 97.9
Anomalous multiplicity 7.2 7.2 7.2
Cell 49.76 66.11 59.61 90.0 97.25 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97918

Sweep:

SWEEP1

Files:

/programs/datagrid/771/RAP_001_7_4_1_######.cbf

Images:

1 - 2400

Beam:

(164.88, 154.72) -> (164.88, 154.7)

Distance:

250.0 -> 250.49

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.65 4.48 1.65
Low resolution limit 66.11 66.16 1.68
Completeness 98.1 99.9 81.5
Multiplicity 13.9 13.7 10.9
I/sigma 15.4 75.4 0.3
Rmerge 0.069 0.032 4.727
CC half 1.0 1.0 0.355
Anomalous completeness 97.8 99.8 80.1
Anomalous multiplicity 7.1 7.1 7.1
Cell 49.76 66.109 59.59 90.0 97.251 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.