Data DOI: 10.15785/SBGRID/769 | ID: 769
Publication DOI: 10.1016/j.molcel.2020.10.042
6VZD Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Rapoport Laboratory, Harvard Medical School
Release Date: 17 Nov 2020
1. If this dataset is locally available, it should be accessable at /programs/datagrid/769
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/769 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/769 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/769 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/769 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 769 ; shasum -c files.sha'
Storage requirements: 41G
Biological Sample:
Mouse surfactant protein B, N-terminal domain (K46E/R51E mutant) with bound lipid
Dataset Type:
X-Ray Diffraction
Subject Composition:
Ligand, Protein
Collection Facility:
APS 24-ID-E
Data Creation Date:
10 Dec 2019
Related Datasets:
Bodnar, NO; Wu, X; Rapoport, TA. 2020. "X-Ray Diffraction data for: Mouse surfactant protein B, N-terminal domain (K46E/R51E mutant) with bound lipid. PDB Code 6VZD", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/769.
Native dataset #2 of 4 that were merged for structure solution
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Nicholas O Bodnar | Depositor | HMS |
| Tom A Rapoport | HMS | |
| Xudong Wu | Data Collector | HMS |
| Tom Rapoport | PI | Harvard Medical School |
none
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97918
Sweep:
SWEEP1
Files:
/programs/datagrid/769/RAP_001_7_2_1_######.cbf
Images:
1 - 2400
Beam:
(164.88, 154.72) -> (164.88, 154.7)
Distance:
250.0 -> 250.4
Spacegroup:
P 1 21 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.73 | 4.69 | 1.73 |
| Low resolution limit | 39.6 | 39.61 | 1.76 |
| Completeness | 99.5 | 100.0 | 98.2 |
| Multiplicity | 14.1 | 13.4 | 14.2 |
| I/sigma | 14.2 | 55.7 | 0.1 |
| Rmerge | 0.069 | 0.031 | 5.356 |
| CC half | 0.999 | 0.999 | 0.319 |
| Anomalous completeness | 99.3 | 99.9 | 97.7 |
| Anomalous multiplicity | 7.2 | 7.2 | 7.2 |
| Cell | 49.86 | 66.16 | 59.67 | 90.0 | 97.47 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97918
Sweep:
SWEEP1
Files:
/programs/datagrid/769/RAP_001_7_2_1_######.cbf
Images:
1 - 2400
Beam:
(164.88, 154.72) -> (164.88, 154.7)
Distance:
250.0 -> 250.56
Spacegroup:
P 1 21 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.73 | 4.7 | 1.73 |
| Low resolution limit | 59.16 | 59.2 | 1.76 |
| Completeness | 99.5 | 100.0 | 98.2 |
| Multiplicity | 14.1 | 13.4 | 14.2 |
| I/sigma | 14.2 | 55.8 | 0.1 |
| Rmerge | 0.069 | 0.031 | 5.383 |
| CC half | 0.999 | 0.999 | 0.303 |
| Anomalous completeness | 99.3 | 99.9 | 97.6 |
| Anomalous multiplicity | 7.2 | 7.2 | 7.2 |
| Cell | 49.86 | 66.16 | 59.67 | 90.0 | 97.47 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97918
Sweep:
SWEEP1
Files:
/programs/datagrid/769/RAP_001_7_2_1_######.cbf
Images:
1 - 2400
Beam:
(164.88, 154.72) -> (164.88, 154.7)
Distance:
250.0 -> 250.58
Spacegroup:
P 1 21 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.66 | 4.5 | 1.66 |
| Low resolution limit | 66.1 | 66.16 | 1.69 |
| Completeness | 98.4 | 100.0 | 84.5 |
| Multiplicity | 13.9 | 13.7 | 11.2 |
| I/sigma | 15.7 | 81.0 | 0.3 |
| Rmerge | 0.071 | 0.031 | 4.842 |
| CC half | 1.0 | 0.999 | 0.309 |
| Anomalous completeness | 98.2 | 100.0 | 84.0 |
| Anomalous multiplicity | 7.1 | 7.1 | 7.1 |
| Cell | 49.826 | 66.105 | 59.619 | 90.0 | 97.465 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
