Data DOI: 10.15785/SBGRID/768 | ID: 768
Publication DOI: 10.1016/j.molcel.2020.10.042
6VZD Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Rapoport Laboratory, Harvard Medical School
Release Date: 17 Nov 2020
1. If this dataset is locally available, it should be accessable at /programs/datagrid/768
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/768 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/768 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/768 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/768 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 768 ; shasum -c files.sha'
Storage requirements: 41G
Biological Sample:
Mouse surfactant protein B, N-terminal domain (K46E/R51E mutant) with bound lipid
Dataset Type:
X-Ray Diffraction
Subject Composition:
Ligand, Protein
Collection Facility:
APS 24-ID-E
Data Creation Date:
10 Dec 2019
Related Datasets:
Bodnar, NO; Wu, X; Rapoport, TA. 2020. "X-Ray Diffraction data for: Mouse surfactant protein B, N-terminal domain (K46E/R51E mutant) with bound lipid. PDB Code 6VZD", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/768.
Native dataset #1 of 4 that were merged for structure solution
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Nicholas O Bodnar | Depositor | HMS |
| Tom A Rapoport | HMS | |
| Xudong Wu | Data Collector | HMS |
| Tom Rapoport | PI | Harvard Medical School |
none
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97918
Sweep:
SWEEP1
Files:
/programs/datagrid/768/RAP_001_7_1_1_######.cbf
Images:
1 - 2400
Beam:
(164.88, 154.72) -> (164.88, 154.71)
Distance:
250.0 -> 250.89
Spacegroup:
P 1 21 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.7 | 4.61 | 1.7 |
| Low resolution limit | 39.58 | 39.59 | 1.73 |
| Completeness | 99.2 | 100.0 | 95.4 |
| Multiplicity | 14.0 | 13.4 | 13.3 |
| I/sigma | 14.4 | 58.3 | 0.1 |
| Rmerge | 0.066 | 0.031 | 5.135 |
| CC half | 0.999 | 0.999 | 0.253 |
| Anomalous completeness | 99.1 | 99.9 | 95.2 |
| Anomalous multiplicity | 7.2 | 7.2 | 7.2 |
| Cell | 49.82 | 66.13 | 59.62 | 90.0 | 97.47 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97918
Sweep:
SWEEP1
Files:
/programs/datagrid/768/RAP_001_7_1_1_######.cbf
Images:
1 - 2400
Beam:
(164.88, 154.72) -> (164.88, 154.7)
Distance:
250.0 -> 250.53
Spacegroup:
P 1 21 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.7 | 4.61 | 1.7 |
| Low resolution limit | 49.4 | 49.42 | 1.73 |
| Completeness | 99.2 | 100.0 | 95.4 |
| Multiplicity | 14.0 | 13.4 | 13.3 |
| I/sigma | 14.4 | 58.3 | 0.1 |
| Rmerge | 0.066 | 0.031 | 5.116 |
| CC half | 1.0 | 0.999 | 0.257 |
| Anomalous completeness | 99.1 | 99.9 | 95.2 |
| Anomalous multiplicity | 7.2 | 7.2 | 7.2 |
| Cell | 49.82 | 66.13 | 59.62 | 90.0 | 97.47 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97918
Sweep:
SWEEP1
Files:
/programs/datagrid/768/RAP_001_7_1_1_######.cbf
Images:
1 - 2400
Beam:
(164.88, 154.72) -> (164.88, 154.7)
Distance:
250.0 -> 250.66
Spacegroup:
P 1 21 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.62 | 4.4 | 1.62 |
| Low resolution limit | 66.08 | 66.13 | 1.65 |
| Completeness | 96.6 | 100.0 | 72.3 |
| Multiplicity | 13.7 | 13.7 | 10.7 |
| I/sigma | 14.8 | 73.9 | 0.3 |
| Rmerge | 0.071 | 0.034 | 4.435 |
| CC half | 0.999 | 0.999 | 0.338 |
| Anomalous completeness | 96.3 | 99.9 | 71.5 |
| Anomalous multiplicity | 7.0 | 7.0 | 7.0 |
| Cell | 49.797 | 66.08 | 59.585 | 90.0 | 97.472 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
