Data DOI: 10.15785/SBGRID/763 | ID: 763
Publication DOI: 10.1016/j.molcel.2020.10.042
6VYN Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Rapoport Laboratory, Harvard Medical School
Release Date: 17 Nov 2020
1. If this dataset is locally available, it should be accessable at /programs/datagrid/763
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/763 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/763 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/763 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/763 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 763 ; shasum -c files.sha'
Storage requirements: 3.1G
Biological Sample:
Mouse surfactant protein B, wild-type N-terminal domain with bound lipid
Dataset Type:
X-Ray Diffraction
Subject Composition:
Ligand, Protein
Collection Facility:
APS 24-ID-C
Data Creation Date:
18 Oct 2017
Related Datasets:
Bodnar, NO; Rapoport, TA. 2020. "X-Ray Diffraction data for: Mouse surfactant protein B, wild-type N-terminal domain with bound lipid. PDB Code 6VYN", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/763.
Sulfur-SAD dataset #7 (of 7 that were merged to create a dataset for structure solution)
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Nicholas O Bodnar | Data Collector, Depositor | HMS |
| Tom A Rapoport | HMS | |
| Tom Rapoport | PI | Harvard Medical School |
Datasets 1-7 were indexed/integrated with XDS, then combined using the Phenix scale_and_merge program
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.7712
Sweep:
SWEEP1
Files:
/programs/datagrid/763/puck1_sample4_1_1_####.cbf
Images:
1 - 520
Beam:
(217.0, 223.04) -> (217.0, 222.93)
Distance:
215.0 -> 215.26
Spacegroup:
P 1 21 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.44 | 6.62 | 2.44 |
| Low resolution limit | 60.59 | 60.61 | 2.48 |
| Completeness | 90.6 | 90.3 | 90.4 |
| Multiplicity | 2.6 | 2.6 | 2.6 |
| I/sigma | 9.0 | 23.3 | 0.5 |
| Rmerge | 0.046 | 0.025 | 1.661 |
| CC half | 0.989 | 0.984 | 0.319 |
| Anomalous completeness | 59.4 | 73.3 | 54.3 |
| Anomalous multiplicity | 1.6 | 1.6 | 1.6 |
| Cell | 108.32 | 94.34 | 114.92 | 90.0 | 90.34 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.7712
Sweep:
SWEEP1
Files:
/programs/datagrid/763/puck1_sample4_1_1_####.cbf
Images:
1 - 520
Beam:
(217.0, 223.04) -> (217.0, 222.95)
Distance:
215.0 -> 214.98
Spacegroup:
P 1 21 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.43 | 6.59 | 2.43 |
| Low resolution limit | 79.06 | 79.1 | 2.47 |
| Completeness | 90.6 | 90.4 | 90.3 |
| Multiplicity | 2.6 | 2.6 | 2.6 |
| I/sigma | 8.9 | 23.2 | 0.5 |
| Rmerge | 0.046 | 0.025 | 1.735 |
| CC half | 0.989 | 0.984 | 0.297 |
| Anomalous completeness | 59.4 | 73.3 | 54.3 |
| Anomalous multiplicity | 1.6 | 1.6 | 1.6 |
| Cell | 108.32 | 94.34 | 114.92 | 90.0 | 90.34 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.7712
Sweep:
SWEEP1
Files:
/programs/datagrid/763/puck1_sample4_1_1_####.cbf
Images:
1 - 520
Beam:
(217.0, 223.04) -> (217.0, 222.93)
Distance:
215.0 -> 215.64
Spacegroup:
P 21 21 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.28 | 6.18 | 2.28 |
| Low resolution limit | 114.99 | 115.14 | 2.32 |
| Completeness | 98.6 | 98.8 | 94.8 |
| Multiplicity | 4.6 | 4.6 | 4.2 |
| I/sigma | 5.7 | 34.3 | 0.0 |
| Rmerge | 0.092 | 0.041 | 2.381 |
| CC half | 0.993 | 0.991 | 0.405 |
| Anomalous completeness | 95.4 | 96.3 | 88.1 |
| Anomalous multiplicity | 2.5 | 2.5 | 2.5 |
| Cell | 94.455 | 108.452 | 114.989 | 90.0 | 90.0 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
