Data DOI: 10.15785/SBGRID/757 | ID: 757
Publication DOI: 10.1016/j.molcel.2020.10.042
6VYN Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Rapoport Laboratory, Harvard Medical School
Release Date: Nov. 17, 2020
1. If this dataset is locally available, it should be accessable at /programs/datagrid/757
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/757 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/757 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/757 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/757 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 757 ; shasum -c files.sha'
Storage requirements: 3.1G
Biological Sample:
Mouse surfactant protein B, wild-type N-terminal domain with bound lipid
Dataset Type:
X-Ray Diffraction
Subject Composition:
Ligand, Protein
Collection Facility:
APS 24-ID-C
Data Creation Date:
Oct. 18, 2017
Related Datasets:
Bodnar, NO; Rapoport, T. 2020. "X-Ray Diffraction data for: Mouse surfactant protein B, wild-type N-terminal domain with bound lipid. PDB Code 6VYN", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/757.
Sulfur-SAD dataset #1 (of 7 that were merged to create a dataset for structure solution)
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Nicholas O Bodnar | Data Collector, Depositor | HMS |
| Tom Rapoport | PI | Harvard Medical School |
Datasets 1-7 were combined using the Phenix scale_and_merge program
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.7712
Sweep:
SWEEP1
Files:
/programs/datagrid/757/puck1_sample2_1_####.cbf
Images:
1 - 520
Beam:
(217.0, 223.04) -> (217.0, 222.98)
Distance:
215.0 -> 214.47
Spacegroup:
P 21 21 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.33 | 6.32 | 2.33 |
| Low resolution limit | 50.64 | 50.65 | 2.37 |
| Completeness | 99.4 | 99.0 | 98.3 |
| Multiplicity | 4.6 | 4.5 | 4.5 |
| I/sigma | 14.9 | 45.4 | 0.6 |
| Rmerge | 0.041 | 0.019 | 1.817 |
| CC half | 0.999 | 0.999 | 0.32 |
| Anomalous completeness | 96.4 | 95.9 | 96.3 |
| Anomalous multiplicity | 2.5 | 2.5 | 2.5 |
| Cell | 93.61 | 108.1 | 114.64 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.7712
Sweep:
SWEEP1
Files:
/programs/datagrid/757/puck1_sample2_1_####.cbf
Images:
1 - 520
Beam:
(217.0, 223.04) -> (217.0, 222.97)
Distance:
215.0 -> 214.89
Spacegroup:
P 21 21 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.34 | 6.35 | 2.34 |
| Low resolution limit | 70.76 | 70.8 | 2.38 |
| Completeness | 99.4 | 99.0 | 98.6 |
| Multiplicity | 4.6 | 4.5 | 4.6 |
| I/sigma | 15.0 | 45.5 | 0.6 |
| Rmerge | 0.041 | 0.019 | 1.733 |
| CC half | 0.999 | 0.999 | 0.339 |
| Anomalous completeness | 96.4 | 95.9 | 97.0 |
| Anomalous multiplicity | 2.5 | 2.5 | 2.5 |
| Cell | 93.61 | 108.1 | 114.64 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.7712
Sweep:
SWEEP1
Files:
/programs/datagrid/757/puck1_sample2_1_####.cbf
Images:
1 - 520
Beam:
(217.0, 223.04) -> (217.0, 222.99)
Distance:
215.0 -> 214.98
Spacegroup:
P 21 21 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.22 | 6.02 | 2.22 |
| Low resolution limit | 114.68 | 114.84 | 2.26 |
| Completeness | 99.2 | 99.5 | 93.8 |
| Multiplicity | 4.5 | 4.6 | 3.1 |
| I/sigma | 13.6 | 64.0 | 0.4 |
| Rmerge | 0.05 | 0.022 | 1.295 |
| CC half | 0.998 | 0.998 | 0.045 |
| Anomalous completeness | 95.8 | 97.9 | 74.2 |
| Anomalous multiplicity | 2.4 | 2.4 | 2.4 |
| Cell | 93.628 | 108.125 | 114.683 | 90.0 | 90.0 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
