Data DOI: 10.15785/SBGRID/761 | ID: 761
Publication DOI: 10.1016/j.molcel.2020.10.042
6VYN Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Rapoport Laboratory, Harvard Medical School
Release Date: 17 Nov 2020
1. If this dataset is locally available, it should be accessable at /programs/datagrid/761
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/761 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/761 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/761 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/761 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 761 ; shasum -c files.sha'
Storage requirements: 3.1G
Biological Sample:
Mouse surfactant protein B, wild-type N-terminal domain with bound lipid
Dataset Type:
X-Ray Diffraction
Subject Composition:
Ligand
Collection Facility:
APS 24-ID-C
Data Creation Date:
18 Oct 2017
Related Datasets:
Bodnar, NO; Rapoport, TA. 2020. "X-Ray Diffraction data for: Mouse surfactant protein B, wild-type N-terminal domain with bound lipid. PDB Code 6VYN", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/761.
Sulfur-SAD dataset #5 (of 7 that were merged to create a dataset for structure solution)
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Nicholas O Bodnar | Data Collector, Depositor | HMS |
| Tom A Rapoport | HMS | |
| Tom Rapoport | PI | Harvard Medical School |
Datasets 1-7 were indexed/integrated with XDS, then combined using the Phenix scale_and_merge program
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.7712
Sweep:
SWEEP1
Files:
/programs/datagrid/761/puck1_sample3_2_1_####.cbf
Images:
1 - 520
Beam:
(217.0, 223.04) -> (217.0, 223.03)
Distance:
215.0 -> 214.7
Spacegroup:
P 21 21 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.25 | 6.09 | 2.25 |
| Low resolution limit | 30.45 | 30.45 | 2.29 |
| Completeness | 97.4 | 98.8 | 90.4 |
| Multiplicity | 4.7 | 4.6 | 3.7 |
| I/sigma | 14.0 | 42.0 | 0.5 |
| Rmerge | 0.042 | 0.022 | 2.158 |
| CC half | 0.999 | 0.998 | 0.302 |
| Anomalous completeness | 95.0 | 95.8 | 85.2 |
| Anomalous multiplicity | 2.5 | 2.5 | 2.5 |
| Cell | 94.04 | 107.76 | 114.77 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.7712
Sweep:
SWEEP1
Files:
/programs/datagrid/761/puck1_sample3_2_1_####.cbf
Images:
1 - 520
Beam:
(217.0, 223.04) -> (217.0, 223.02)
Distance:
215.0 -> 214.62
Spacegroup:
P 21 21 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.26 | 6.13 | 2.26 |
| Low resolution limit | 78.56 | 78.61 | 2.3 |
| Completeness | 97.6 | 98.8 | 91.7 |
| Multiplicity | 4.7 | 4.6 | 3.9 |
| I/sigma | 14.2 | 42.0 | 0.6 |
| Rmerge | 0.041 | 0.022 | 1.78 |
| CC half | 0.999 | 0.999 | 0.409 |
| Anomalous completeness | 95.1 | 95.9 | 87.1 |
| Anomalous multiplicity | 2.5 | 2.5 | 2.5 |
| Cell | 94.04 | 107.76 | 114.77 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.7712
Sweep:
SWEEP1
Files:
/programs/datagrid/761/puck1_sample3_2_1_####.cbf
Images:
1 - 520
Beam:
(217.0, 223.04) -> (217.0, 223.03)
Distance:
215.0 -> 214.79
Spacegroup:
P 21 21 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.2 | 5.97 | 2.2 |
| Low resolution limit | 114.8 | 114.96 | 2.24 |
| Completeness | 96.7 | 99.7 | 79.4 |
| Multiplicity | 4.6 | 4.6 | 3.4 |
| I/sigma | 16.1 | 64.7 | 0.3 |
| Rmerge | 0.046 | 0.027 | 1.986 |
| CC half | 0.994 | 0.991 | 0.314 |
| Anomalous completeness | 95.0 | 98.9 | 71.3 |
| Anomalous multiplicity | 2.4 | 2.4 | 2.4 |
| Cell | 94.058 | 107.772 | 114.8 | 90.0 | 90.0 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
