Data DOI: 10.15785/SBGRID/758 | ID: 758
Publication DOI: 10.1016/j.molcel.2020.10.042
6VYN Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Rapoport Laboratory, Harvard Medical School
Release Date: 17 Nov 2020
1. If this dataset is locally available, it should be accessable at /programs/datagrid/758
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/758 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/758 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/758 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/758 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 758 ; shasum -c files.sha'
Storage requirements: 3.1G
Biological Sample:
Mouse surfactant protein B, wild-type N-terminal domain with bound lipid
Dataset Type:
X-Ray Diffraction
Subject Composition:
Ligand, Protein
Collection Facility:
APS 24-ID-C
Data Creation Date:
18 Oct 2017
Related Datasets:
Bodnar, NO; Rapoport, TA. 2020. "X-Ray Diffraction data for: Mouse surfactant protein B, wild-type N-terminal domain with bound lipid. PDB Code 6VYN", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/758.
Sulfur-SAD dataset #2 (of 7 that were merged to create a dataset for structure solution)
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Nicholas O Bodnar | Data Collector, Depositor | HMS |
| Tom A Rapoport | HMS | |
| Tom Rapoport | PI | Harvard Medical School |
Datasets 1-7 were indexed/integrated with XDS, then combined using the Phenix scale_and_merge program
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.7712
Sweep:
SWEEP1
Files:
/programs/datagrid/758/puck1_sample2_3_1_####.cbf
Images:
1 - 520
Beam:
(217.0, 223.04) -> (217.0, 223.03)
Distance:
215.0 -> 214.67
Spacegroup:
P 21 21 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.25 | 6.1 | 2.25 |
| Low resolution limit | 48.95 | 48.97 | 2.29 |
| Completeness | 99.3 | 99.2 | 96.0 |
| Multiplicity | 4.6 | 4.6 | 3.5 |
| I/sigma | 12.3 | 35.8 | 0.3 |
| Rmerge | 0.048 | 0.03 | 2.616 |
| CC half | 0.998 | 0.998 | 0.318 |
| Anomalous completeness | 95.8 | 96.0 | 82.0 |
| Anomalous multiplicity | 2.4 | 2.4 | 2.4 |
| Cell | 93.91 | 107.63 | 114.73 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.7712
Sweep:
SWEEP1
Files:
/programs/datagrid/758/puck1_sample2_3_1_####.cbf
Images:
1 - 520
Beam:
(217.0, 223.04) -> (217.0, 223.02)
Distance:
215.0 -> 214.55
Spacegroup:
P 21 21 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.25 | 6.11 | 2.25 |
| Low resolution limit | 78.5 | 78.54 | 2.29 |
| Completeness | 99.3 | 99.1 | 95.6 |
| Multiplicity | 4.6 | 4.6 | 3.5 |
| I/sigma | 12.3 | 35.8 | 0.4 |
| Rmerge | 0.048 | 0.03 | 2.608 |
| CC half | 0.998 | 0.997 | 0.316 |
| Anomalous completeness | 95.7 | 96.0 | 81.5 |
| Anomalous multiplicity | 2.4 | 2.4 | 2.4 |
| Cell | 93.91 | 107.63 | 114.73 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.7712
Sweep:
SWEEP1
Files:
/programs/datagrid/758/puck1_sample2_3_1_####.cbf
Images:
1 - 520
Beam:
(217.0, 223.04) -> (217.0, 223.03)
Distance:
215.0 -> 214.62
Spacegroup:
P 21 21 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.18 | 5.92 | 2.18 |
| Low resolution limit | 78.53 | 78.58 | 2.22 |
| Completeness | 98.7 | 99.5 | 87.4 |
| Multiplicity | 4.5 | 4.7 | 2.8 |
| I/sigma | 12.8 | 47.5 | 0.3 |
| Rmerge | 0.057 | 0.04 | 1.674 |
| CC half | 0.991 | 0.988 | 0.333 |
| Anomalous completeness | 94.4 | 97.9 | 64.2 |
| Anomalous multiplicity | 2.4 | 2.4 | 2.4 |
| Cell | 93.907 | 107.685 | 114.764 | 90.0 | 90.0 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
