Data DOI: 10.15785/SBGRID/669 | ID: 669
6P80 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Corbett Laboratory, University of California, San Diego
Release Date: 20 Dec 2019
1. If this dataset is locally available, it should be accessable at /programs/datagrid/669
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/669 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/669 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/669 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/669 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 669 ; shasum -c files.sha'
Storage requirements: 8.5G
Biological Sample:
E. coli MS115-1 CdnC, ATP-bound (Selenomethionine)
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
APS 24ID-E
Data Creation Date:
19 Apr 2017
Related Datasets:
Ye, Q; Corbett, KD. 2019. "X-Ray Diffraction data for: E. coli MS115-1 CdnC, ATP-bound (Selenomethionine). PDB Code 6P80", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/669.
Single-wavelength selenomethionine anomalous dataset
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Kevin D Corbett | Depositor | UC San Diego |
| Qiaozhen Ye | Data Collector | UC San Diego |
| Kevin Corbett | PI | University of California, San Diego |
none
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97918
Sweep:
SWEEP1
Files:
/programs/datagrid/669/LICR_2_1_1_######.cbf
Images:
1 - 500
Beam:
(163.68, 154.85) -> (163.68, 154.89)
Distance:
275.0 -> 276.33
Spacegroup:
P 31 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.87 | 5.07 | 1.87 |
| Low resolution limit | 39.95 | 39.96 | 1.9 |
| Completeness | 100.0 | 100.0 | 100.0 |
| Multiplicity | 5.6 | 5.1 | 5.6 |
| I/sigma | 16.0 | 52.9 | 0.7 |
| Rmerge | 0.043 | 0.018 | 2.309 |
| CC half | 0.999 | 0.999 | 0.335 |
| Anomalous completeness | 98.5 | 96.7 | 98.8 |
| Anomalous multiplicity | 3.0 | 3.0 | 3.0 |
| Cell | 76.29 | 76.29 | 100.32 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97918
Sweep:
SWEEP1
Files:
/programs/datagrid/669/LICR_2_1_1_######.cbf
Images:
1 - 500
Beam:
(163.68, 154.85) -> (163.68, 154.89)
Distance:
275.0 -> 275.54
Spacegroup:
P 31 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.91 | 5.18 | 1.91 |
| Low resolution limit | 50.11 | 50.13 | 1.94 |
| Completeness | 100.0 | 100.0 | 100.0 |
| Multiplicity | 5.5 | 5.0 | 5.8 |
| I/sigma | 12.0 | 36.3 | 0.7 |
| Rmerge | 0.061 | 0.029 | 2.615 |
| CC half | 0.998 | 0.998 | 0.365 |
| Anomalous completeness | 98.5 | 96.1 | 99.6 |
| Anomalous multiplicity | 2.9 | 2.9 | 2.9 |
| Cell | 76.24 | 76.24 | 100.22 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97918
Sweep:
SWEEP1
Files:
/programs/datagrid/669/LICR_2_1_1_######.cbf
Images:
1 - 500
Beam:
(163.68, 154.85) -> (163.68, 154.9)
Distance:
275.0 -> 275.2
Spacegroup:
P 31 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.8 | 4.88 | 1.8 |
| Low resolution limit | 66.09 | 66.14 | 1.83 |
| Completeness | 100.0 | 100.0 | 98.7 |
| Multiplicity | 5.5 | 5.2 | 4.3 |
| I/sigma | 13.3 | 58.9 | 0.2 |
| Rmerge | 0.056 | 0.029 | 2.202 |
| CC half | 0.999 | 0.999 | 0.373 |
| Anomalous completeness | 99.4 | 98.2 | 96.4 |
| Anomalous multiplicity | 2.9 | 2.9 | 2.9 |
| Cell | 76.317 | 76.317 | 100.374 | 90.0 | 90.0 | 120.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
