X-Ray Diffraction data from Human biliverdin IX beta reductase, source of 5OOH structure

Data DOI: 10.15785/SBGRID/487 | ID: 487

Publication DOI: 10.1074/jbc.RA118.001803

5OOH Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Pereira Laboratory, IBMC/i3S, Universidade do Porto

Release Date: March 9, 2018

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/487

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/487 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/487 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/487 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/487 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 487 ; shasum -c files.sha'

Storage requirements: 7.1G

Biological Sample:

Human biliverdin IX beta reductase

Dataset Type:

X-Ray Diffraction

Subject Composition:

Ligand, Protein

Collection Facility:

ESRF ID23EH1

Data Creation Date:

April 14, 2010

Related Datasets:

486


Cite this Dataset

Manso, JA.; Pereira, PJ.B.. 2018. "X-Ray Diffraction data for: Human biliverdin IX beta reductase. PDB Code 5OOH", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/487.

Download Citation

Dataset Description

X-Ray Diffraction data from human biliverdin IX beta reductase - erythrosine extra bluish complex, source of 5OOH structure - high resolution pass

Project Members

Name Additional Roles Affiliation While Working on the Project
Pedro J.B. PereiraData Collector, DepositorIBMC - Instituto de Biologia Molecular e Celular
Jose A. MansoData CollectorIBMC - Instituto de Biologia Molecular e Celular
Pedro PereiraPIUniversidade do Porto

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9762

Sweep:

SWEEP1

Files:

/programs/datagrid/487/ac7460_high_1_###.img

Images:

1 - 400

Beam:

(159.16, 158.87) -> (159.16, 158.86)

Distance:

139.43 -> 139.13

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.15 3.12 1.15
Low resolution limit 37.73 37.75 1.17
Completeness 93.6 86.6 67.9
Multiplicity 4.0 3.7 3.5
I/sigma 9.1 24.3 1.2
Rmerge 0.084 0.033 1.14
CC half 0.997 0.998 0.272
Anomalous completeness 90.1 80.7 60.2
Anomalous multiplicity 2.1 2.1 2.1
Cell 49.345 40.3 107.332 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9762

Sweep:

SWEEP1

Files:

/programs/datagrid/487/ac7460_high_1_###.img

Images:

1 - 400

Beam:

(159.16, 158.87) -> (159.16, 158.81)

Distance:

139.43 -> 138.86

Spacegroup:

P 21 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.12 3.04 1.12
Low resolution limit 32.2 32.22 1.14
Completeness 91.7 93.5 55.4
Multiplicity 7.9 6.3 6.9
I/sigma 15.0 39.3 1.1
Rmerge 0.089 0.029 1.613
CC half 0.999 0.999 0.303
Anomalous completeness 91.2 92.8 54.8
Anomalous multiplicity 4.1 4.1 4.1
Cell 49.26 107.22 40.28 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9762

Sweep:

SWEEP1

Files:

/programs/datagrid/487/ac7460_high_1_###.img

Images:

1 - 400

Beam:

(159.16, 158.87) -> (159.16, 158.82)

Distance:

139.43 -> 138.93

Spacegroup:

P 21 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.12 3.04 1.12
Low resolution limit 32.2 32.22 1.14
Completeness 91.7 93.5 55.4
Multiplicity 7.9 6.3 6.9
I/sigma 15.0 39.3 1.1
Rmerge 0.089 0.029 1.619
CC half 0.999 0.999 0.303
Anomalous completeness 91.2 92.8 54.7
Anomalous multiplicity 4.1 4.1 4.1
Cell 49.26 107.22 40.28 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9762

Sweep:

SWEEP1

Files:

/programs/datagrid/487/ac7460_high_1_###.img

Images:

1 - 400

Beam:

(159.16, 158.87) -> (159.16, 158.8)

Distance:

139.43 -> 138.75

Spacegroup:

P 21 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.1 2.99 1.1
Low resolution limit 35.69 35.71 1.12
Completeness 89.0 94.0 44.4
Multiplicity 7.9 6.7 6.5
I/sigma 12.4 34.0 1.2
Rmerge 0.088 0.035 1.6
CC half 0.999 0.999 0.354
Anomalous completeness 88.4 93.3 44.0
Anomalous multiplicity 4.1 4.1 4.1
Cell 49.221 107.064 40.223 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.