X-Ray Diffraction data from Human biliverdin IX beta reductase, source of 5OOH structure

Data DOI: 10.15785/SBGRID/486 | ID: 486

Publication DOI: 10.1074/jbc.RA118.001803

5OOH Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Pereira Laboratory, Universidade Do Porto

Release Date: 9 Mar 2018

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/486

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/486 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/486 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/486 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/486 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 486 ; shasum -c files.sha'

Storage requirements: 3.6G

Biological Sample:

Human biliverdin IX beta reductase

Dataset Type:

X-Ray Diffraction

Subject Composition:

Ligand, Protein

Collection Facility:

ESRF ID23EH1

Data Creation Date:

14 Apr 2010

Related Datasets:

487


Cite this Dataset

Manso, JA.; Pereira, PJ.B.. 2018. "X-Ray Diffraction data for: Human biliverdin IX beta reductase. PDB Code 5OOH", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/486.

Download Citation

Dataset Description

X-Ray Diffraction data from human biliverdin IX beta reductase - erythrosine extra bluish complex, source of 5OOH structure - low resolution pass

Project Members

Name Additional Roles Affiliation While Working on the Project
Pedro J.B. PereiraData Collector, DepositorIBMC - Instituto de Biologia Molecular e Celular
Jose A. MansoData CollectorIBMC - Instituto de Biologia Molecular e Celular
Pedro PereiraPIUniversidade Do Porto

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9762

Sweep:

SWEEP1

Files:

/programs/datagrid/486/ac7460_1_###.img

Images:

1 - 200

Beam:

(159.1, 159.05) -> (159.1, 159.06)

Distance:

288.27 -> 287.93

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.51 4.11 1.51
Low resolution limit 49.25 49.28 1.54
Completeness 65.1 99.8 4.5
Multiplicity 3.8 3.8 1.3
I/sigma 20.8 34.8 2.4
Rmerge 0.038 0.024 0.322
CC half 0.998 0.996 0.691
Anomalous completeness 61.9 97.9 0.8
Anomalous multiplicity 2.0 2.0 2.0
Cell 49.255 40.224 107.268 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9762

Sweep:

SWEEP1

Files:

/programs/datagrid/486/ac7460_1_###.img

Images:

1 - 200

Beam:

(159.1, 159.05) -> (159.1, 158.99)

Distance:

288.27 -> 287.89

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.51 4.1 1.51
Low resolution limit 44.76 44.78 1.54
Completeness 65.8 100.0 5.5
Multiplicity 7.4 7.2 2.2
I/sigma 31.5 52.1 1.7
Rmerge 0.043 0.025 0.484
CC half 0.999 0.999 0.499
Anomalous completeness 64.4 99.8 3.7
Anomalous multiplicity 4.0 4.0 4.0
Cell 40.21 49.25 107.26 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9762

Sweep:

SWEEP1

Files:

/programs/datagrid/486/ac7460_1_###.img

Images:

1 - 200

Beam:

(159.1, 159.05) -> (159.1, 159.0)

Distance:

288.27 -> 287.87

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.51 4.1 1.51
Low resolution limit 44.76 44.78 1.54
Completeness 65.8 100.0 5.5
Multiplicity 7.4 7.2 2.2
I/sigma 31.5 52.1 1.7
Rmerge 0.043 0.025 0.488
CC half 0.999 0.999 0.499
Anomalous completeness 64.4 99.8 3.7
Anomalous multiplicity 4.0 4.0 4.0
Cell 40.21 49.25 107.26 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9762

Sweep:

SWEEP1

Files:

/programs/datagrid/486/ac7460_1_###.img

Images:

1 - 200

Beam:

(159.1, 159.05) -> (159.1, 158.98)

Distance:

288.27 -> 287.76

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.53 4.16 1.53
Low resolution limit 53.63 53.67 1.56
Completeness 67.1 100.0 4.3
Multiplicity 7.1 7.2 1.4
I/sigma 25.5 42.0 2.7
Rmerge 0.045 0.029 0.421
CC half 0.998 0.995 0.576
Anomalous completeness 63.8 100.0 1.1
Anomalous multiplicity 3.9 3.9 3.9
Cell 40.221 49.269 107.27 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.