X-Ray Diffraction data from Mycobacterial glucosylglycerate hydrolase - Se-Met derivative, source of 5OHZ structure

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Data DOI: 10.15785/SBGRID/466 | ID: 466

5OHZ Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Pereira Laboratory, IBMC/i3S, Universidade do Porto

Release Date: May 10, 2019

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/466

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/466 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/466 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/466 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/466 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 466 ; shasum -c files.sha'

Storage requirements: 8.7G

Biological Sample:

Mycobacterial glucosylglycerate hydrolase - Se-Met derivative

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

ESRF ID29

Data Creation Date:

Nov. 27, 2015

Related Datasets:

465


Cite this Dataset

Cereija, TB.; Pereira, PJ.B.. 2019. "X-Ray Diffraction data for: Mycobacterial glucosylglycerate hydrolase - Se-Met derivative. PDB Code 5OHZ", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/466.

Download Citation

Dataset Description

X-Ray Diffraction data from M. hassiacum GgH, source of 5OHZ structure - inflexion point

Project Members

Name Additional Roles Affiliation While Working on the Project
Pedro J.B. PereiraDepositorIBMC - Instituto de Biologia Molecular e Celular
Tatiana B. CereijaData CollectorIBMC - Instituto de Biologia Molecular e Celular
Pedro PereiraPIUniversidade do Porto

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

xia2 -2d

xia2 -3d

xia2 -3dii

xia2 -dials
/programs/x86_64-linux/dials/1.14.12/bin.capsules//xia2 pipeline=2d /programs/datagrid//466/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/1.14.12/bin.capsules//xia2 pipeline=3d /programs/datagrid//466/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/1.14.12/bin.capsules//xia2 pipeline=3dii /programs/datagrid//466/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97923

Sweep:

SWEEP1

Files:

/programs/datagrid/466/bi1451_w1_6_####.cbf

Images:

1 - 1500

Beam:

(215.85, 211.73) -> (215.85, 211.94)

Distance:

344.16 -> 333.77

Spacegroup:

P 2 2 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.19 5.94 2.19
Low resolution limit 76.32 76.37 2.23
Completeness 99.1 97.7 99.8
Multiplicity 4.8 4.9 4.2
I/sigma 2.7 5.4 0.7
Rmerge 0.27 0.14 1.222
CC half 0.963 0.984 0.382
Anomalous completeness 93.4 87.7 97.5
Anomalous multiplicity 2.6 2.6 2.6
Cell 160.74 187.24 86.72 90.0 90.0 90.0
/programs/x86_64-linux/dials/1.14.12/bin.capsules//xia2 pipeline=dials /programs/datagrid//466/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.


License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.