X-Ray Diffraction data from Human thrombin - A. gambiae cE5 complex, source of 5NHU structure

Data DOI: 10.15785/SBGRID/431 | ID: 431

Publication DOI: 10.1074/jbc.M117.788042

5NHU Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Pereira Laboratory, IBMC/i3S, Universidade do Porto

Release Date: June 30, 2017

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/431

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/431 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/431 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/431 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/431 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 431 ; shasum -c files.sha'

Storage requirements: 14G

Biological Sample:

Human thrombin - A. gambiae cE5 complex

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

ESRF ID30B

Data Creation Date:

May 7, 2016

Related Datasets:

430


Cite this Dataset

Ripoll-Rozada, J; Pereira, PJB. 2017. "X-Ray Diffraction data for: Human thrombin - A. gambiae cE5 complex. PDB Code 5NHU", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/431.

Download Citation

Dataset Description

X-ray diffraction data from human thrombin - A. gambiae cE5 complex, source of structure 5NHU - dataset 2

Project Members

Name Additional Roles Affiliation While Working on the Project
Pedro JB PereiraData Collector, DepositorIBMC-Instituto de Biologia Molecular e Celular
Jorge Ripoll-RozadaData CollectorIBMC-Instituto de Biologia Molecular e Celular
Pedro PereiraPIUniversidade do Porto

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97264

Sweep:

SWEEP1

Files:

/programs/datagrid/431/bh3545_w1_1_####.cbf

Images:

1 - 2100

Beam:

(217.26, 209.56) -> (217.26, 209.97)

Distance:

243.88 -> 243.93

Spacegroup:

C 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.65 4.48 1.65
Low resolution limit 49.11 49.13 1.68
Completeness 86.9 81.3 89.9
Multiplicity 2.0 2.2 2.0
I/sigma 2.8 6.1 1.0
Rmerge 0.206 0.159 0.495
CC half 0.882 0.871 0.525
Anomalous completeness 53.1 63.2 50.3
Anomalous multiplicity 1.3 1.3 1.3
Cell 156.781 78.658 110.448 90.0 121.665 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97264

Sweep:

SWEEP1

Files:

/programs/datagrid/431/bh3545_w1_1_####.cbf

Images:

1 - 2100

Beam:

(217.26, 209.56) -> (217.26, 209.87)

Distance:

243.88 -> 242.87

Spacegroup:

C 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.54 4.18 1.54
Low resolution limit 38.7 38.71 1.57
Completeness 93.1 88.1 94.5
Multiplicity 2.0 2.1 2.0
I/sigma 9.7 28.4 1.1
Rmerge 0.036 0.02 0.537
CC half 0.996 0.996 0.57
Anomalous completeness 54.6 64.5 51.1
Anomalous multiplicity 1.3 1.3 1.3
Cell 156.79 78.5 110.3 90.0 121.68 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97264

Sweep:

SWEEP1

Files:

/programs/datagrid/431/bh3545_w1_1_####.cbf

Images:

1 - 2100

Beam:

(217.26, 209.56) -> (217.26, 209.88)

Distance:

243.88 -> 243.32

Spacegroup:

C 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.53 4.15 1.53
Low resolution limit 63.48 63.54 1.56
Completeness 93.0 88.2 92.1
Multiplicity 2.0 2.1 1.9
I/sigma 9.5 28.5 0.9
Rmerge 0.036 0.02 0.577
CC half 0.996 0.996 0.533
Anomalous completeness 54.4 64.5 47.5
Anomalous multiplicity 1.3 1.3 1.3
Cell 156.79 78.49 110.3 90.0 121.68 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97264

Sweep:

SWEEP1

Files:

/programs/datagrid/431/bh3545_w1_1_####.cbf

Images:

1 - 2100

Beam:

(217.26, 209.56) -> (217.26, 209.88)

Distance:

243.88 -> 243.65

Spacegroup:

C 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.52 4.12 1.52
Low resolution limit 46.98 47.01 1.55
Completeness 92.1 87.7 86.9
Multiplicity 2.1 2.2 1.9
I/sigma 7.6 22.0 1.0
Rmerge 0.049 0.028 0.52
CC half 0.977 0.976 0.477
Anomalous completeness 56.7 69.8 43.0
Anomalous multiplicity 1.3 1.3 1.3
Cell 156.985 78.611 110.418 90.0 121.679 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.