Data DOI: 10.15785/SBGRID/430 | ID: 430
Publication DOI: 10.1074/jbc.M117.788042
5NHU Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Pereira Laboratory, IBMC/i3S, Universidade do Porto
Release Date: 30 Jun 2017
1. If this dataset is locally available, it should be accessable at /programs/datagrid/430
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/430 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/430 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/430 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/430 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 430 ; shasum -c files.sha'
Storage requirements: 14G
Biological Sample:
Human thrombin - A. gambiae cE5 complex
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
ESRF ID30B
Data Creation Date:
7 May 2016
Related Datasets:
Ripoll-Rozada, J; Pereira, PJB. 2017. "X-Ray Diffraction data for: Human thrombin - A. gambiae cE5 complex. PDB Code 5NHU", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/430.
X-ray diffraction data from human thrombin - A. gambiae cE5 complex, source of structure 5NHU - dataset 1
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Pedro JB Pereira | Data Collector, Depositor | IBMC-Instituto de Biologia Molecular e Celular |
| Jorge Ripoll-Rozada | Data Collector | IBMC-Instituto de Biologia Molecular e Celular |
| Pedro Pereira | PI | Universidade do Porto |
none
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97264
Sweep:
SWEEP1
Files:
/programs/datagrid/430/af6654_w1_1_####.cbf
Images:
1 - 2400
Beam:
(217.26, 209.56) -> (217.26, 209.86)
Distance:
243.82 -> 243.13
Spacegroup:
C 1 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.38 | 3.74 | 1.38 |
| Low resolution limit | 29.11 | 29.12 | 1.4 |
| Completeness | 92.6 | 87.3 | 93.2 |
| Multiplicity | 2.3 | 2.5 | 2.4 |
| I/sigma | 8.8 | 29.8 | 0.7 |
| Rmerge | 0.038 | 0.021 | 1.291 |
| CC half | 0.998 | 0.997 | 0.311 |
| Anomalous completeness | 50.3 | 62.0 | 45.4 |
| Anomalous multiplicity | 1.5 | 1.5 | 1.5 |
| Cell | 156.87 | 78.65 | 110.74 | 90.0 | 121.86 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97264
Sweep:
SWEEP1
Files:
/programs/datagrid/430/af6654_w1_1_####.cbf
Images:
1 - 2400
Beam:
(217.26, 209.56) -> (217.26, 209.85)
Distance:
243.82 -> 243.4
Spacegroup:
C 1 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.38 | 3.75 | 1.38 |
| Low resolution limit | 47.03 | 47.06 | 1.4 |
| Completeness | 92.6 | 87.2 | 93.2 |
| Multiplicity | 2.3 | 2.5 | 2.4 |
| I/sigma | 8.8 | 29.8 | 0.7 |
| Rmerge | 0.038 | 0.021 | 1.29 |
| CC half | 0.998 | 0.997 | 0.31 |
| Anomalous completeness | 50.3 | 61.9 | 45.4 |
| Anomalous multiplicity | 1.5 | 1.5 | 1.5 |
| Cell | 156.87 | 78.65 | 110.74 | 90.0 | 121.86 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97264
Sweep:
SWEEP1
Files:
/programs/datagrid/430/af6654_w1_1_####.cbf
Images:
1 - 2400
Beam:
(217.26, 209.56) -> (217.26, 209.86)
Distance:
243.82 -> 243.57
Spacegroup:
C 1 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.33 | 3.61 | 1.33 |
| Low resolution limit | 47.04 | 47.07 | 1.35 |
| Completeness | 91.3 | 88.7 | 70.0 |
| Multiplicity | 2.4 | 2.6 | 2.3 |
| I/sigma | 11.6 | 76.3 | 0.3 |
| Rmerge | 0.055 | 0.033 | 1.329 |
| CC half | 0.983 | 0.971 | 0.317 |
| Anomalous completeness | 51.7 | 68.4 | 32.1 |
| Anomalous multiplicity | 1.6 | 1.6 | 1.6 |
| Cell | 156.913 | 78.673 | 110.784 | 90.0 | 121.873 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
