Data DOI: 10.15785/SBGRID/4 | ID: 4
Publication DOI: 10.1016/ j.cell.2011.10.020
3TRZ Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Sliz Laboratory, Harvard Medical School
Release Date: 13 Apr 2015
1. If this dataset is locally available, it should be accessable at /programs/datagrid/4
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/4 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/4 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/4 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/4 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 4 ; shasum -c files.sha'
Storage requirements: 1.3G
Biological Sample:
Lin28/let-7d microRNA complex
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein, RNA
Collection Facility:
NSLS X25
Data Creation Date:
8 Sep 2010
Related Datasets:
Nam, Y; Sliz, P. 2015. "X-Ray Diffraction data for: Lin28/let-7d microRNA complex. PDB Code 3TRZ", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/4.
Native dataset
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Yunsun Nam | Data Collector | Harvard Medical School |
| Piotr Sliz | Depositor, PI | Harvard Medical School |
none
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.0
Sweep:
SWEEP1
Files:
/programs/datagrid/4/yn152_4_###.img
Images:
1 - 70
Beam:
(158.0, 158.0) -> (158.0, 157.58)
Distance:
400.0 -> 399.0
Spacegroup:
P 4 21 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.65 | 7.19 | 2.65 |
| Low resolution limit | 66.69 | 66.71 | 2.7 |
| Completeness | 98.9 | 93.6 | 99.2 |
| Multiplicity | 5.7 | 5.4 | 5.2 |
| I/sigma | 16.0 | 40.8 | 1.1 |
| Rmerge | 0.075 | 0.022 | 1.723 |
| CC half | 0.999 | 0.999 | 0.372 |
| Anomalous completeness | 98.3 | 95.4 | 92.3 |
| Anomalous multiplicity | 3.0 | 3.0 | 3.0 |
| Cell | 143.88 | 143.88 | 177.8 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.0
Sweep:
SWEEP1
Files:
/programs/datagrid/4/yn152_4_###.img
Images:
1 - 70
Beam:
(158.0, 158.0) -> (158.0, 157.58)
Distance:
400.0 -> 399.45
Spacegroup:
P 4 21 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.65 | 7.19 | 2.65 |
| Low resolution limit | 66.69 | 66.71 | 2.7 |
| Completeness | 98.9 | 93.6 | 99.2 |
| Multiplicity | 5.7 | 5.4 | 5.2 |
| I/sigma | 16.0 | 40.8 | 1.1 |
| Rmerge | 0.075 | 0.022 | 1.723 |
| CC half | 0.999 | 0.999 | 0.371 |
| Anomalous completeness | 98.3 | 95.4 | 92.3 |
| Anomalous multiplicity | 3.0 | 3.0 | 3.0 |
| Cell | 143.88 | 143.88 | 177.8 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.0
Sweep:
SWEEP1
Files:
/programs/datagrid/4/yn152_4_###.img
Images:
1 - 70
Beam:
(158.0, 158.0) -> (158.0, 157.58)
Distance:
400.0 -> 394.41
Spacegroup:
P 4 21 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.64 | 7.15 | 2.64 |
| Low resolution limit | 87.84 | 87.89 | 2.68 |
| Completeness | 99.2 | 96.0 | 97.1 |
| Multiplicity | 5.7 | 5.4 | 5.2 |
| I/sigma | 14.0 | 47.3 | 0.5 |
| Rmerge | 0.097 | 0.03 | 1.914 |
| CC half | 0.989 | 0.986 | 0.37 |
| Anomalous completeness | 99.1 | 97.4 | 90.9 |
| Anomalous multiplicity | 3.0 | 3.0 | 3.0 |
| Cell | 143.191 | 143.191 | 176.648 | 90.0 | 90.0 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
