Data DOI: 10.15785/SBGRID/3 | ID: 3
Publication DOI: 10.1016/j.cell.2011.10.020
3TRZ Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Sliz Laboratory, Harvard Medical School
Release Date: April 13, 2015
1. If this dataset is locally available, it should be accessable at /programs/datagrid/3
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/3 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/3 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/3 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/3 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 3 ; shasum -c files.sha'
Storage requirements: 2.0G
Biological Sample:
Lin28/let-7d microRNA complex
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein, RNA
Collection Facility:
NSLS X25
Data Creation Date:
Sept. 7, 2010
Related Datasets:
Nam, Y; Sliz, P. 2015. "X-Ray Diffraction data for: Lin28/let-7d microRNA complex. PDB Code 3TRZ", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/3.
Zn-SAD dataset
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Yunsun Nam | Data Collector | Harvard Medical School |
| Piotr Sliz | Depositor, PI | Harvard Medical School |
none
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.2549
Sweep:
SWEEP1
Files:
/programs/datagrid/3/yn112_2_###.img
Images:
1 - 110
Beam:
(158.0, 158.0) -> (158.0, 157.63)
Distance:
350.0 -> 351.26
Spacegroup:
P 41 21 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.9 | 7.87 | 2.9 |
| Low resolution limit | 89.47 | 89.52 | 2.95 |
| Completeness | 100.0 | 100.0 | 99.0 |
| Multiplicity | 8.6 | 7.9 | 6.4 |
| I/sigma | 16.0 | 43.9 | 0.8 |
| Rmerge | 0.123 | 0.025 | 2.166 |
| CC half | 0.999 | 1.0 | 0.367 |
| Anomalous completeness | 99.9 | 99.6 | 98.8 |
| Anomalous multiplicity | 4.6 | 4.6 | 4.6 |
| Cell | 144.05 | 144.05 | 178.95 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.2549
Sweep:
SWEEP1
Files:
/programs/datagrid/3/yn112_2_###.img
Images:
1 - 110
Beam:
(158.0, 158.0) -> (158.0, 157.63)
Distance:
350.0 -> 351.5
Spacegroup:
P 41 21 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.9 | 7.87 | 2.9 |
| Low resolution limit | 101.86 | 101.92 | 2.95 |
| Completeness | 100.0 | 100.0 | 99.0 |
| Multiplicity | 8.6 | 7.9 | 6.4 |
| I/sigma | 16.0 | 44.0 | 0.8 |
| Rmerge | 0.123 | 0.025 | 2.162 |
| CC half | 0.999 | 1.0 | 0.368 |
| Anomalous completeness | 99.9 | 99.6 | 98.8 |
| Anomalous multiplicity | 4.6 | 4.6 | 4.6 |
| Cell | 144.05 | 144.05 | 178.95 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.2549
Sweep:
SWEEP1
Files:
/programs/datagrid/3/yn112_2_###.img
Images:
1 - 110
Beam:
(158.0, 158.0) -> (158.0, 157.63)
Distance:
350.0 -> 348.99
Spacegroup:
P 41 21 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.94 | 7.98 | 2.94 |
| Low resolution limit | 88.97 | 89.01 | 2.99 |
| Completeness | 100.0 | 100.0 | 99.9 |
| Multiplicity | 8.8 | 8.0 | 7.6 |
| I/sigma | 9.4 | 32.9 | 0.5 |
| Rmerge | 0.132 | 0.042 | 1.902 |
| CC half | 0.998 | 0.998 | 0.707 |
| Anomalous completeness | 100.0 | 99.9 | 99.8 |
| Anomalous multiplicity | 4.7 | 4.7 | 4.7 |
| Cell | 143.241 | 143.241 | 177.93 | 90.0 | 90.0 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
