Data DOI: 10.15785/SBGRID/361 | ID: 361
5T4M Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Gaudet Laboratory, Harvard University
Release Date: 14 Feb 2017
1. If this dataset is locally available, it should be accessable at /programs/datagrid/361
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/361 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/361 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/361 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/361 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 361 ; shasum -c files.sha'
Storage requirements: 2.7G
Biological Sample:
Human Protocadherin-15 EC3-5
Dataset Type:
X-Ray Diffraction
Subject Composition:
Ligand, Protein
Collection Facility:
24-ID-C, NE-CAT, APS, Chicago, IL
Data Creation Date:
8 Aug 2013
Related Datasets:
Powers, RE; Sotomayor, M; Gaudet, R. 2017. "X-Ray Diffraction data for: Human Protocadherin-15 EC3-5. PDB Code 5T4M", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/361.
Native dataset of Human Protocadherin-15 EC3-5 used to determine structure using molecular replacement.
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Robert E Powers | Data Collector, Depositor | Biophysics Graduate Program, Harvard University, Boston MA 02115 |
| Rachelle Gaudet | Department of Molecular and Cellular Biology, Harvard University, Cambridge MA 02138 | |
| Marcos Sotomayor | Department of Chemistry and Biochemistry, The Ohio State University, Columbus OH 43210 | |
| Rachelle Gaudet | PI | Harvard University |
none
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9823
Sweep:
SWEEP1
Files:
/programs/datagrid/361/RG002_6_1_####.cbf
Images:
1 - 450
Beam:
(218.99, 217.73) -> (218.99, 217.59)
Distance:
400.0 -> 402.42
Spacegroup:
P 63 2 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.52 | 6.83 | 2.52 |
| Low resolution limit | 36.02 | 36.02 | 2.56 |
| Completeness | 99.9 | 97.6 | 100.0 |
| Multiplicity | 8.6 | 5.6 | 10.0 |
| I/sigma | 3.7 | 3.4 | 1.1 |
| Rmerge | 0.379 | 0.371 | 1.406 |
| CC half | 0.827 | 0.797 | 0.18 |
| Anomalous completeness | 98.4 | 87.4 | 100.0 |
| Anomalous multiplicity | 4.7 | 4.7 | 4.7 |
| Cell | 106.54 | 106.54 | 195.57 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Reprocessing failed.
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9823
Sweep:
SWEEP1
Files:
/programs/datagrid/361/RG002_6_1_####.cbf
Images:
1 - 450
Beam:
(218.99, 217.73) -> (218.99, 219.58)
Distance:
400.0 -> 406.08
Spacegroup:
P 3
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.54 | 4.17 | 1.54 |
| Low resolution limit | 93.03 | 93.2 | 1.56 |
| Completeness | 67.0 | 98.4 | 1.7 |
| Multiplicity | 2.3 | 2.7 | 1.0 |
| I/sigma | 1.1 | 11.2 | 0.0 |
| Rmerge | 0.402 | 0.304 | 0.0 |
| CC half | 0.518 | 0.233 | 0.0 |
| Anomalous completeness | 47.7 | 88.4 | 0.0 |
| Anomalous multiplicity | 1.4 | 1.4 | 1.4 |
| Cell | 107.418 | 107.418 | 197.106 | 90.0 | 90.0 | 120.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
