Data DOI: 10.15785/SBGRID/358 | ID: 358
5SZB Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Corbett Laboratory, University of California, San Diego
Release Date: 5 Sep 2017
1. If this dataset is locally available, it should be accessable at /programs/datagrid/358
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/358 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/358 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/358 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/358 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 358 ; shasum -c files.sha'
Storage requirements: 5.3G
Biological Sample:
Human Dpf3 double-PHD domain bound to histone H3 tail peptide with acetylated K14
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
SSRL Beamline 9-2
Data Creation Date:
14 Jun 2016
Related Datasets:
Local, A; Ren, B; Shiau, AK; Singh, N; Corbett, KD. 2017. "X-Ray Diffraction data for: Human Dpf3 double-PHD domain bound to histone H3 tail peptide with acetylated K14. PDB Code 5SZB", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/358.
Native data for PDB 5SZB
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Kevin D Corbett | Depositor | University of California, San Diego and Ludwig Institute for Cancer Research |
| Andrea Local | University of California, San Diego and Ludwig Institute for Cancer Research | |
| Bing Ren | University of California, San Diego and Ludwig Institute for Cancer Research | |
| Andrew K Shiau | Ludwig Institute for Cancer Research | |
| Namit Singh | Data Collector | University of California, San Diego and Ludwig Institute for Cancer Research |
| Kevin Corbett | PI | University of California, San Diego |
Process to 1.2 A with XDS, Space group P4(3)2(1)2
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97946
Sweep:
SWEEP1
Files:
/programs/datagrid/358/DPF3_2348_6_#####.cbf
Images:
1 - 900
Beam:
(217.32, 211.82) -> (217.32, 211.44)
Distance:
200.0 -> 199.16
Spacegroup:
P 41 21 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.03 | 2.8 | 1.03 |
| Low resolution limit | 38.27 | 38.3 | 1.05 |
| Completeness | 90.0 | 100.0 | 17.5 |
| Multiplicity | 10.2 | 11.6 | 1.7 |
| I/sigma | 31.6 | 72.4 | 1.0 |
| Rmerge | 0.031 | 0.027 | 0.556 |
| CC half | 1.0 | 0.999 | 0.488 |
| Anomalous completeness | 80.0 | 99.9 | 5.8 |
| Anomalous multiplicity | 5.8 | 5.8 | 5.8 |
| Cell | 39.61 | 39.61 | 148.55 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97946
Sweep:
SWEEP1
Files:
/programs/datagrid/358/DPF3_2348_6_#####.cbf
Images:
1 - 900
Beam:
(217.32, 211.82) -> (217.32, 211.43)
Distance:
200.0 -> 199.09
Spacegroup:
P 41 21 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.03 | 2.8 | 1.03 |
| Low resolution limit | 38.27 | 38.3 | 1.05 |
| Completeness | 90.0 | 100.0 | 17.5 |
| Multiplicity | 10.2 | 11.6 | 1.7 |
| I/sigma | 31.6 | 72.4 | 1.0 |
| Rmerge | 0.031 | 0.027 | 0.549 |
| CC half | 1.0 | 0.999 | 0.502 |
| Anomalous completeness | 80.0 | 99.9 | 5.8 |
| Anomalous multiplicity | 5.8 | 5.8 | 5.8 |
| Cell | 39.61 | 39.61 | 148.55 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Reprocessing failed.
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
