Data DOI: 10.15785/SBGRID/357 | ID: 357
5SZB Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Corbett Laboratory, University of California, San Diego
Release Date: 5 Sep 2017
1. If this dataset is locally available, it should be accessable at /programs/datagrid/357
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/357 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/357 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/357 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/357 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 357 ; shasum -c files.sha'
Storage requirements: 5.3G
Biological Sample:
Human Dpf3 double-PHD domain bound to histone H3 tail peptide with acetylated K14
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
SSRL Beamline 9-2
Data Creation Date:
14 Jun 2016
Related Datasets:
Local, A; Ren, B; Shiau, AK; Singh, N; Corbett, KD. 2017. "X-Ray Diffraction data for: Human Dpf3 double-PHD domain bound to histone H3 tail peptide with acetylated K14. PDB Code 5SZB", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/357.
Zinc SAD data for PDB entry 5SZB
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Kevin D Corbett | Depositor | University of California, San Diego and Ludwig Institute for Cancer Research |
| Andrea Local | University of California, San Diego and Ludwig Institute for Cancer Research | |
| Bing Ren | University of California, San Diego and Ludwig Institute for Cancer Research | |
| Andrew K Shiau | University of California, San Diego and Ludwig Institute for Cancer Research | |
| Namit Singh | Data Collector | University of California, San Diego and Ludwig Institute for Cancer Research |
| Kevin Corbett | PI | University of California, San Diego |
Process to 1.55 A with XDS, Spacegroup P4(3)2(1)2
Version:
version unreported
Reprocessing failed.
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.28129
Sweep:
SWEEP1
Files:
/programs/datagrid/357/DPF3_2348-Zn_4_#####.cbf
Images:
1 - 900
Beam:
(217.32, 211.82) -> (217.32, 211.45)
Distance:
200.0 -> 199.1
Spacegroup:
P 41 21 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.35 | 3.66 | 1.35 |
| Low resolution limit | 38.26 | 38.27 | 1.37 |
| Completeness | 84.0 | 100.0 | 17.6 |
| Multiplicity | 10.8 | 11.4 | 2.0 |
| I/sigma | 33.5 | 46.4 | 4.0 |
| Rmerge | 0.047 | 0.046 | 0.166 |
| CC half | 0.999 | 0.998 | 0.899 |
| Anomalous completeness | 81.6 | 100.0 | 9.1 |
| Anomalous multiplicity | 6.0 | 6.0 | 6.0 |
| Cell | 39.59 | 39.59 | 148.7 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.28129
Sweep:
SWEEP1
Files:
/programs/datagrid/357/DPF3_2348-Zn_4_#####.cbf
Images:
1 - 900
Beam:
(217.32, 211.82) -> (217.32, 211.45)
Distance:
200.0 -> 199.13
Spacegroup:
P 4 21 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.35 | 3.67 | 1.35 |
| Low resolution limit | 49.58 | 49.61 | 1.37 |
| Completeness | 83.7 | 100.0 | 18.1 |
| Multiplicity | 10.6 | 11.3 | 2.1 |
| I/sigma | 33.5 | 54.0 | 2.4 |
| Rmerge | 0.052 | 0.048 | 0.154 |
| CC half | 0.998 | 0.997 | 0.909 |
| Anomalous completeness | 81.5 | 100.0 | 9.3 |
| Anomalous multiplicity | 5.9 | 5.9 | 5.9 |
| Cell | 39.602 | 39.602 | 148.736 | 90.0 | 90.0 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
