Data DOI: 10.15785/SBGRID/20 | ID: 20
Publication DOI: 10.7554/eLife.07367
4XGU Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Corbett Laboratory, University of California, San Diego
Release Date: 6 May 2015
1. If this dataset is locally available, it should be accessable at /programs/datagrid/20
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/20 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/20 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/20 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/20 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 20 ; shasum -c files.sha'
Storage requirements: 11G
Biological Sample:
C. elegan PCH-2
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
SSRL Beamline 12-2
Data Creation Date:
3 Mar 2014
Related Datasets:
Ye, Q; Corbett, KD. 2015. "X-Ray Diffraction data for: C. elegan PCH-2. PDB Code 4XGU", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/20.
Native dataset of C. elegans PCH-2, crystallized without addition of nucleotides
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Qiaozhen Ye | Data Collector | University of California, San Diego |
| Kevin D Corbett | Depositor, PI | University of California, San Diego |
Process with XDS to 2.3 Å, perform anisotropic data cutoffs at 2.3 Å for a* and b*, and 3.2 Å on c*, and apply anisotropic scaling B-factors of -8.09 (a*), -8.02 (b*), 16.11 (c*) followed by isotropic b-factor correction of -19.65 (originally done automatically with UCLA diffraction anisotropy server)
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9795
Sweep:
SWEEP1
Files:
/programs/datagrid/20/mD5_2_#####.cbf
Images:
1 - 1800
Beam:
(217.32, 211.82) -> (217.32, 211.76)
Distance:
400.0 -> 400.5
Spacegroup:
C 2 2 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.31 | 6.26 | 2.31 |
| Low resolution limit | 42.73 | 42.74 | 2.35 |
| Completeness | 99.9 | 100.0 | 99.7 |
| Multiplicity | 13.6 | 12.7 | 13.7 |
| I/sigma | 17.5 | 64.7 | 0.5 |
| Rmerge | 0.079 | 0.026 | 6.876 |
| CC half | 1.0 | 1.0 | 0.355 |
| Anomalous completeness | 99.8 | 99.9 | 99.4 |
| Anomalous multiplicity | 7.0 | 7.0 | 7.0 |
| Cell | 126.72 | 241.03 | 197.93 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9795
Sweep:
SWEEP1
Files:
/programs/datagrid/20/mD5_2_#####.cbf
Images:
1 - 1800
Beam:
(217.32, 211.82) -> (217.32, 211.77)
Distance:
400.0 -> 399.99
Spacegroup:
C 2 2 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.31 | 6.27 | 2.31 |
| Low resolution limit | 45.78 | 45.79 | 2.35 |
| Completeness | 99.9 | 100.0 | 99.7 |
| Multiplicity | 13.6 | 12.7 | 13.7 |
| I/sigma | 17.5 | 64.7 | 0.5 |
| Rmerge | 0.079 | 0.026 | 6.861 |
| CC half | 1.0 | 1.0 | 0.351 |
| Anomalous completeness | 99.8 | 99.9 | 99.4 |
| Anomalous multiplicity | 7.0 | 7.0 | 7.0 |
| Cell | 126.72 | 241.03 | 197.94 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9795
Sweep:
SWEEP1
Files:
/programs/datagrid/20/mD5_2_#####.cbf
Images:
1 - 1800
Beam:
(217.32, 211.82) -> (217.32, 211.76)
Distance:
400.0 -> 399.92
Spacegroup:
C 2 2 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.15 | 5.83 | 2.15 |
| Low resolution limit | 42.69 | 42.7 | 2.19 |
| Completeness | 99.9 | 100.0 | 99.1 |
| Multiplicity | 13.5 | 13.4 | 13.6 |
| I/sigma | 7.7 | 53.8 | 0.1 |
| Rmerge | 0.103 | 0.035 | 5.543 |
| CC half | 0.999 | 0.999 | 0.299 |
| Anomalous completeness | 99.9 | 100.0 | 99.1 |
| Anomalous multiplicity | 6.9 | 6.9 | 6.9 |
| Cell | 126.622 | 240.809 | 197.731 | 90.0 | 90.0 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
