X-Ray Diffraction data from RT52A (recombinant HIV reverse transcriptase) from E. coli, source of 4LSL structure

Data DOI: 10.15785/SBGRID/19 | ID: 19

Publication DOI: 10.1111/cbdd.12266

4LSL Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Anderson Laboratory, Yale University School of Medicine

Release Date: May 5, 2015

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/19

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/19 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/19 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/19 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/19 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 19 ; shasum -c files.sha'

Storage requirements: 3.2G

Biological Sample:

RT52A (recombinant HIV reverse transcriptase) from E. coli

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

NSLS-I

Data Creation Date:

Feb. 21, 2013

Related Datasets:

None


Cite this Dataset

Frey, KMary; Anderson, K. 2015. "X-Ray Diffraction data for: RT52A (recombinant HIV reverse transcriptase) from E. coli. PDB Code 4LSL", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/19.

Download Citation

Dataset Description

Crystal Structure of HIV-1 Reverse Transcriptase in Complex with (E)-3-(3-(4-chloro-2-(2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy)phenoxy)phenyl)acrylonitrile (JLJ476), a non-nucleoside inhibitor. 180 x 1 degree images collected for processing. Native data set collected on X29A at NSLS-I.

Project Members

Name Additional Roles Affiliation While Working on the Project
Kathleen Mary FreyData Collector, DepositorYale University (School of Medicine)
Karen AndersonPIYale University School of Medicine

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.075

Sweep:

SWEEP2

Files:

/programs/datagrid/19/RT476data_3_1_###.img

Images:

97 - 180

Beam:

(158.1, 156.5) -> (158.1, 157.08)

Distance:

356.06 -> 357.83

Spacegroup:

C 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.32 6.3 2.32
Low resolution limit 107.9 108.02 2.36
Completeness 89.9 84.8 50.9
Multiplicity 3.2 3.2 1.5
I/sigma 11.9 27.0 1.0
Rmerge 0.045 0.028 0.962
CC half 0.998 0.998 0.643
Anomalous completeness 81.0 79.8 25.8
Anomalous multiplicity 1.7 1.7 1.7
Cell 224.915 69.394 104.359 90.0 106.364 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.075

Sweep:

SWEEP2

Files:

/programs/datagrid/19/RT476data_3_1_###.img

Images:

97 - 180

Beam:

(158.1, 156.5) -> (158.1, 157.05)

Distance:

356.06 -> 357.85

Spacegroup:

C 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.36 6.4 2.36
Low resolution limit 53.06 53.07 2.4
Completeness 91.4 82.6 59.8
Multiplicity 3.3 3.3 1.5
I/sigma 16.6 42.9 1.0
Rmerge 0.031 0.02 0.827
CC half 0.999 0.998 0.58
Anomalous completeness 82.3 74.8 32.7
Anomalous multiplicity 1.8 1.8 1.8
Cell 224.97 69.36 104.33 90.0 106.37 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.075

Sweep:

SWEEP2

Files:

/programs/datagrid/19/RT476data_3_1_###.img

Images:

97 - 180

Beam:

(158.1, 156.5) -> (158.1, 157.05)

Distance:

356.06 -> 357.52

Spacegroup:

C 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.37 6.43 2.37
Low resolution limit 53.96 53.98 2.41
Completeness 91.6 82.5 60.5
Multiplicity 3.3 3.3 1.5
I/sigma 16.8 42.9 1.0
Rmerge 0.031 0.02 0.81
CC half 0.999 0.998 0.603
Anomalous completeness 82.7 74.7 32.6
Anomalous multiplicity 1.8 1.8 1.8
Cell 224.97 69.36 104.33 90.0 106.37 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.075

Sweep:

SWEEP2

Files:

/programs/datagrid/19/RT476data_3_1_###.img

Images:

97 - 180

Beam:

(158.1, 156.5) -> (158.1, 157.03)

Distance:

356.06 -> 356.47

Spacegroup:

C 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.33 6.32 2.33
Low resolution limit 57.43 57.45 2.37
Completeness 90.8 85.5 51.0
Multiplicity 3.3 3.3 1.5
I/sigma 12.2 27.9 1.0
Rmerge 0.037 0.022 1.191
CC half 0.999 0.999 0.74
Anomalous completeness 82.8 81.9 26.2
Anomalous multiplicity 1.8 1.8 1.8
Cell 224.659 69.37 104.199 90.0 106.471 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.