Data DOI: 10.15785/SBGRID/993 | ID: 993
7PD5 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Pereira Laboratory, IBMC/i3S, Universidade do Porto
Release Date: 28 Feb 2023
1. If this dataset is locally available, it should be accessable at /programs/datagrid/993
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/993 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/993 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/993 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/993 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 993 ; shasum -c files.sha'
Storage requirements: 14G
Biological Sample:
Mycobacterial glucosyl-3-phosphoglycerate synthase
Dataset Type:
X-Ray Diffraction
Subject Composition:
Ligand, Protein
Collection Facility:
ESRF ID29
Data Creation Date:
13 Feb 2017
Related Datasets:
None
Pereira, PJB. 2023. "X-Ray Diffraction data for: Mycobacterial glucosyl-3-phosphoglycerate synthase. PDB Code 7PD5", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/993.
X-Ray Diffraction data from M. hassiacum GpgS, source of 7PD5 structure
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Pedro JB Pereira | Data Collector, Depositor | IBMC - Instituto de Biologia Molecular e Celular |
| Pedro Pereira | PI | Universidade do Porto |
none
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97915
Sweep:
SWEEP1
Files:
/programs/datagrid/993/GPGS01-GPGS02_w1_1_####.cbf
Images:
1 - 2400
Beam:
(215.34, 211.38) -> (215.34, 211.24)
Distance:
344.55 -> 344.41
Spacegroup:
I 41
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.94 | 5.26 | 1.94 |
| Low resolution limit | 38.96 | 38.97 | 1.97 |
| Completeness | 99.9 | 99.9 | 99.9 |
| Multiplicity | 4.5 | 4.5 | 4.5 |
| I/sigma | 13.9 | 46.0 | 0.5 |
| Rmerge | 0.036 | 0.02 | 2.524 |
| CC half | 0.999 | 0.999 | 0.307 |
| Anomalous completeness | 96.4 | 95.3 | 98.0 |
| Anomalous multiplicity | 2.3 | 2.3 | 2.3 |
| Cell | 100.25 | 100.25 | 123.85 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97915
Sweep:
SWEEP1
Files:
/programs/datagrid/993/GPGS01-GPGS02_w1_1_####.cbf
Images:
1 - 2400
Beam:
(215.34, 211.38) -> (215.34, 211.24)
Distance:
344.55 -> 345.14
Spacegroup:
I 41
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.95 | 5.29 | 1.95 |
| Low resolution limit | 50.12 | 50.14 | 1.98 |
| Completeness | 99.9 | 99.9 | 100.0 |
| Multiplicity | 4.5 | 4.5 | 4.5 |
| I/sigma | 14.1 | 46.0 | 0.5 |
| Rmerge | 0.036 | 0.02 | 2.639 |
| CC half | 0.999 | 0.999 | 0.287 |
| Anomalous completeness | 96.3 | 95.5 | 98.3 |
| Anomalous multiplicity | 2.3 | 2.3 | 2.3 |
| Cell | 100.25 | 100.25 | 123.85 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97915
Sweep:
SWEEP1
Files:
/programs/datagrid/993/GPGS01-GPGS02_w1_1_####.cbf
Images:
1 - 2400
Beam:
(215.34, 211.38) -> (215.34, 211.23)
Distance:
344.55 -> 345.2
Spacegroup:
I 41
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.87 | 5.07 | 1.87 |
| Low resolution limit | 70.84 | 70.89 | 1.9 |
| Completeness | 100.0 | 100.0 | 99.6 |
| Multiplicity | 4.5 | 4.6 | 4.6 |
| I/sigma | 15.9 | 79.2 | 0.2 |
| Rmerge | 0.042 | 0.022 | 3.002 |
| CC half | 0.999 | 0.999 | 0.346 |
| Anomalous completeness | 98.3 | 99.3 | 98.9 |
| Anomalous multiplicity | 2.3 | 2.3 | 2.3 |
| Cell | 100.18 | 100.18 | 123.819 | 90.0 | 90.0 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
