Data DOI: 10.15785/SBGRID/990 | ID: 990
Publication DOI: 10.1107/S2053230X14009911
4CV7 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Niemann Laboratory, Bielefeld University
Release Date: 7 Feb 2023
1. If this dataset is locally available, it should be accessable at /programs/datagrid/990
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/990 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/990 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/990 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/990 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 990 ; shasum -c files.sha'
Storage requirements: 7.0G
Biological Sample:
Virulence-associated protein VapB from the intracellular pathogen Rhodococcus equi
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
ID29, European Synchrotron Radiation Facility (ESRF)
Data Creation Date:
30 Nov 2012
Related Datasets:
None
Fedorov, R; Niemann, HH. 2023. "X-Ray Diffraction data for: Virulence-associated protein VapB from the intracellular pathogen Rhodococcus equi. PDB Code 4CV7", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/990.
native data
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Hartmut H Niemann | Depositor | Bielefeld University, Department of Chemistry |
| Roman Fedorov | Data Collector | Hannover Medical School (Medizinische Hochschule Hannover, MHH) |
| Hartmut Niemann | PI | Bielefeld University |
The XDS.INP file generated by the beamline and the geometry correction files are given as templates in the zip archive "processing_template".
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.91985
Sweep:
SWEEP1
Files:
/programs/datagrid/990/vap_1w1_1_####.cbf
Images:
1 - 1200
Beam:
(215.88, 211.32) -> (215.88, 211.3)
Distance:
286.33 -> 284.62
Spacegroup:
P 61 2 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.29 | 3.5 | 1.29 |
| Low resolution limit | 36.29 | 36.31 | 1.31 |
| Completeness | 99.6 | 100.0 | 93.8 |
| Multiplicity | 33.7 | 34.8 | 14.0 |
| I/sigma | 19.4 | 75.8 | 0.5 |
| Rmerge | 0.097 | 0.045 | 3.235 |
| CC half | 1.0 | 1.0 | 0.251 |
| Anomalous completeness | 99.4 | 100.0 | 92.4 |
| Anomalous multiplicity | 18.1 | 18.1 | 18.1 |
| Cell | 83.81 | 83.81 | 49.12 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.91985
Sweep:
SWEEP1
Files:
/programs/datagrid/990/vap_1w1_1_####.cbf
Images:
1 - 1200
Beam:
(215.88, 211.32) -> (215.88, 211.31)
Distance:
286.33 -> 284.59
Spacegroup:
P 61 2 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.29 | 3.5 | 1.29 |
| Low resolution limit | 40.68 | 40.7 | 1.31 |
| Completeness | 99.6 | 100.0 | 93.8 |
| Multiplicity | 33.7 | 34.8 | 14.0 |
| I/sigma | 19.4 | 75.7 | 0.5 |
| Rmerge | 0.097 | 0.045 | 3.234 |
| CC half | 1.0 | 1.0 | 0.279 |
| Anomalous completeness | 99.4 | 100.0 | 92.4 |
| Anomalous multiplicity | 18.1 | 18.1 | 18.1 |
| Cell | 83.81 | 83.81 | 49.12 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.91985
Sweep:
SWEEP1
Files:
/programs/datagrid/990/vap_1w1_1_####.cbf
Images:
1 - 1200
Beam:
(215.88, 211.32) -> (215.88, 211.3)
Distance:
286.33 -> 284.7
Spacegroup:
P 61 2 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.24 | 3.37 | 1.24 |
| Low resolution limit | 72.6 | 72.72 | 1.26 |
| Completeness | 98.1 | 100.0 | 81.4 |
| Multiplicity | 31.4 | 34.7 | 10.4 |
| I/sigma | 15.0 | 68.2 | 0.4 |
| Rmerge | 0.107 | 0.058 | 2.481 |
| CC half | 0.999 | 0.999 | 0.355 |
| Anomalous completeness | 97.6 | 100.0 | 79.7 |
| Anomalous multiplicity | 16.8 | 16.8 | 16.8 |
| Cell | 83.827 | 83.827 | 49.119 | 90.0 | 90.0 | 120.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
