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X-Ray Diffraction data from Rhizopuspepsin, source of 8FXQ structure

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Data DOI: 10.15785/SBGRID/989 | ID: 989

Publication DOI: 10.1021/OL016090+

8FXQ Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Rich Laboratory, University of Wisconsin-Madison

Release Date: 3 Feb 2023

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/989

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/989 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/989 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/989 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/989 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 989 ; shasum -c files.sha'

Storage requirements: 2.2G

Biological Sample:

Rhizopuspepsin

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

APS Beamline 19-ID

Data Creation Date:

27 Oct 2006

Related Datasets:

None


Cite this Dataset

Satyshur, KA; Rich, DH.; Ripka, AS.; Rich, D. 2023. "X-Ray Diffraction data for: Rhizopuspepsin. PDB Code 8FXQ", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/989.

Download Citation

Dataset Description

Engineered Rhizopuspepsin crystallized with a de novo designed modified peptide Ala-Cys-Val-Lys, with the Cys S and the Lys N covalently linked to a cyclohexal ring. Two molecules in the ASU.

Project Members

Name Additional Roles Affiliation While Working on the Project
Kenneth A SatyshurData Collector, DepositorAssociate Scientist
Daniel H. RichProfessor and P.I.
Amy S. RipkaGraduate Student
Dan RichPIUniversity of Wisconsin-Madison

Reprocessing Instructions

Data can be processed easily with HKL2000 or autoPROC from Global Phasing. html of the process is provided.

Processing Bundle

Reprocessing Data

About Reprocessing

xia2 -2d

xia2 -3d

xia2 -3dii

xia2 -dials
/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=3d /programs/datagrid//989/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=3dii /programs/datagrid//989/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=dials /programs/datagrid//989/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.


License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.