X-Ray Diffraction data from InlB392 (Listeria monocytogenes InlB (internalin B), residues 36-392), source of 7PV9 structure

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Data DOI: 10.15785/SBGRID/982 | ID: 982

Publication DOI: 10.1107/S2059798322000432

7PV9 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Niemann Laboratory, Bielefeld University

Release Date: Jan. 17, 2023

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/982

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/982 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/982 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/982 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/982 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 982 ; shasum -c files.sha'

Storage requirements: 21G

Biological Sample:

InlB392 (Listeria monocytogenes InlB (internalin B), residues 36-392)

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

beamline P13, operated by EMBL Hamburg at the PETRA III storage ring (DESY, Hamburg, Germany)

Data Creation Date:

Nov. 28, 2017

Related Datasets:

None


Cite this Dataset

Widmann, C; Niemann, HH. 2023. "X-Ray Diffraction data for: InlB392 (Listeria monocytogenes InlB (internalin B), residues 36-392). PDB Code 7PV9", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/982.

Download Citation

Dataset Description

native data

Project Members

Name Additional Roles Affiliation While Working on the Project
Hartmut H NiemannDepositorBielefeld University, Department of Chemistry
Christiane WidmannData CollectorBielefeld University, Department of Chemistry
Hartmut NiemannPIBielefeld University

Reprocessing Instructions

XDS.INP file used for processing is provided as template. Only images 1200 to 3600 were used for indexing and integration.

Processing Bundle

Reprocessing Data

About Reprocessing

xia2 -2d

xia2 -3d

xia2 -3dii

xia2 -dials
/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=3d /programs/datagrid//982/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=3dii /programs/datagrid//982/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=dials /programs/datagrid//982/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.91636

Sweep:

SWEEP1

Files:

/programs/datagrid/982/nh164_3_1_#####.cbf

Images:

1 - 3600

Beam:

(215.86, 210.38) -> (215.86, 211.63)

Distance:

422.2 -> 425.15

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.65 9.87 3.65
Low resolution limit 38.04 38.05 3.72
Completeness 99.7 100.0 82.5
Multiplicity 11.2 9.3 10.7
I/sigma 10.1 43.3 3.1
Rmerge 59.603 0.647 -15.748
CC half 0.23 0.971 0.081
Anomalous completeness 99.0 100.0 81.7
Anomalous multiplicity 6.3 6.3 6.3
Cell 44.506 49.382 219.922 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.