X-Ray Diffraction data from LapD output domain in complex with LapG, source of 4U65 structure

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Data DOI: 10.15785/SBGRID/94 | ID: 94

Publication DOI: 10.7554/eLife.03650

4U65 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Sondermann Laboratory, Cornell University

Release Date: May 19, 2015

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/94

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/94 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/94 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/94 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/94 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 94 ; shasum -c files.sha'

Storage requirements: 1.8G

Biological Sample:

LapD output domain in complex with LapG

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

CHESS A1

Data Creation Date:

March 3, 2012

Related Datasets:

None


Cite this Dataset

Sondermann, H. 2015. "X-Ray Diffraction data for: LapD output domain in complex with LapG. PDB Code 4U65", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/94.

Download Citation

Dataset Description

Native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Holger SondermannData Collector, Depositor, PICornell University

Reprocessing Instructions

beam center x=99.3 , y=100.0 indexed in P21 with HKL2000 DIstance is 217 (not 220 as indicated in the header)

Reprocessing Data

About Reprocessing

xia2 -2d

xia2 -3d

xia2 -3dii

xia2 -dials
/programs/x86_64-linux/dials/1.11.4/dials-1.11.4/build/bin/xia2 pipeline=2d mosflm_beam_centre=99.42,109.29 reverse_phi=True /programs/datagrid//94/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/1.11.4/dials-1.11.4/build/bin/xia2 pipeline=3d mosflm_beam_centre=99.42,109.29 reverse_phi=True /programs/datagrid//94/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/1.11.4/dials-1.11.4/build/bin/xia2 pipeline=3dii mosflm_beam_centre=99.42,109.29 reverse_phi=True /programs/datagrid//94/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/1.11.4/dials-1.11.4/build/bin/xia2 pipeline=dials mosflm_beam_centre=99.42,109.29 reverse_phi=True /programs/datagrid//94/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9767

Sweep:

SWEEP1

Files:

/programs/datagrid/94/dccpx9_1_###.img

Images:

1 - 220

Beam:

(99.42, 109.29) -> (99.42, 110.07)

Distance:

220.0 -> 230.29

Spacegroup:

P 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.94 7.99 2.94
Low resolution limit 84.01 84.04 2.99
Completeness 84.2 100.0 6.3
Multiplicity 4.3 4.1 3.7
I/sigma 0.9 1.5 0.0
Rmerge 0.887 1.163 -50.541
CC half 0.345 -0.049 -0.035
Anomalous completeness 83.4 99.4 6.0
Anomalous multiplicity 2.2 2.2 2.2
Cell 79.878 84.005 94.473 90.0 87.317 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.