X-Ray Diffraction data from AS3.1-PRPF3-HLA*B27, source of 7N2S structure

Data DOI: 10.15785/SBGRID/916 | ID: 916

Publication DOI: 10.1038/s41586-022-05501-7

7N2S Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Garcia Laboratory, Stanford University

Release Date: 9 Dec 2022

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/916

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/916 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/916 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/916 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/916 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 916 ; shasum -c files.sha'

Storage requirements: 5.3G

Biological Sample:

AS3.1-PRPF3-HLA*B27

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

beamline 12-2, SSRL

Data Creation Date:

28 Feb 2020

Related Datasets:

None


Cite this Dataset

Jude, KM; Garcia, KC; Yang, X; Garcia, K. 2022. "X-Ray Diffraction data for: AS3.1-PRPF3-HLA*B27. PDB Code 7N2S", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/916.

Download Citation

Dataset Description

native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Kevin M JudeData Collector, DepositorHHMI/Stanford University
K C GarciaHHMI/Stanford University
Xinbo YangStanford University
K. Christopher GarciaPIStanford University

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97946

Sweep:

SWEEP1

Files:

/programs/datagrid/916/1449-4_1_#####.cbf

Images:

1 - 900

Beam:

(217.32, 211.82) -> (217.32, 211.92)

Distance:

400.0 -> 398.19

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.65 7.18 2.65
Low resolution limit 40.35 40.36 2.7
Completeness 97.2 96.2 97.7
Multiplicity 3.3 3.1 3.3
I/sigma 4.7 18.1 0.4
Rmerge 0.29 0.043 4.084
CC half 0.953 0.993 0.15
Anomalous completeness 90.4 87.4 89.9
Anomalous multiplicity 1.8 1.8 1.8
Cell 83.19 52.78 106.31 90.0 98.27 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97946

Sweep:

SWEEP1

Files:

/programs/datagrid/916/1449-4_1_#####.cbf

Images:

1 - 900

Beam:

(217.32, 211.82) -> (217.32, 211.91)

Distance:

400.0 -> 399.25

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.65 7.19 2.65
Low resolution limit 47.17 47.18 2.7
Completeness 97.4 96.7 97.7
Multiplicity 3.3 3.1 3.3
I/sigma 4.9 18.7 0.4
Rmerge 0.269 0.041 2.769
CC half 0.959 0.996 0.223
Anomalous completeness 90.9 87.9 89.5
Anomalous multiplicity 1.8 1.8 1.8
Cell 83.17 52.77 106.3 90.0 98.26 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97946

Sweep:

SWEEP1

Files:

/programs/datagrid/916/1449-4_1_#####.cbf

Images:

1 - 900

Beam:

(217.32, 211.82) -> (217.32, 211.9)

Distance:

400.0 -> 400.65

Spacegroup:

P 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.64 7.15 2.64
Low resolution limit 47.24 47.25 2.68
Completeness 95.0 95.6 94.5
Multiplicity 3.2 3.2 3.1
I/sigma 6.3 13.2 4.4
Rmerge 0.377 0.089 1.032
CC half 0.647 0.977 0.065
Anomalous completeness 89.5 94.4 87.3
Anomalous multiplicity 1.7 1.7 1.7
Cell 83.261 52.84 106.544 90.0 98.32 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.