Models of protein-peptide complexes

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Data DOI: 10.15785/SBGRID/912 | ID: 912

Publication DOI:

Bonvin Laboratory, Utrecht University

Release Date: May 7, 2024

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/912

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync:// .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync:// .' (Uppsala University, Sweden)

'rsync -av rsync:// .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync:// .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 912 ; shasum -c files.sha'

Storage requirements: 18G

Biological Sample:

Models of protein-peptide complexes

Dataset Type:

Structural Model

Subject Composition:

Ligand, Protein

Collection Facility:


Data Creation Date:

Jan. 10, 2022

Related Datasets:


Cite this Dataset

Charitou, V; van Keulen, SC.; Bonvin, AMJJ. 2024. "Models of protein-peptide complexes.", SBGrid Data Bank, V1,

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Dataset Description

Protein-cyclic peptides docking models obtained with HADDOCK corresponding to the optimal protocol described in: V. Charitou, S.C. van Keulen and A.M.J.J. Bonvin. A Cyclisation and Docking Protocol for Cyclic Peptide-Protein Modelling using HADDOCK2.4. J. Chem. Theo. and Comp. (2022) -

Project Members

Name Additional Roles Affiliation While Working on the Project
Vicky CharitouData CollectorUtrecht University
Siri C. van KeulenData CollectorUtrecht University
Alexandre MJJ BonvinData Collector, Depositor, PIUtrecht University

Reprocessing Instructions


License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.