Data DOI: 10.15785/SBGRID/907 | ID: 907
Publication DOI: 10.1038/s41467-022-30487-1
7QIJ Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Niemann Laboratory, Bielefeld University
Release Date: 23 Sep 2022
1. If this dataset is locally available, it should be accessable at /programs/datagrid/907
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/907 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/907 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/907 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/907 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 907 ; shasum -c files.sha'
Storage requirements: 21G
Biological Sample:
Ternary complex of Yersinia enterocolitica type III secretion (T3S) proteins YscV, YscX and YscY
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
beamline P13, operated by EMBL Hamburg at the PETRA III storage ring (DESY, Hamburg, Germany)
Data Creation Date:
18 Sep 2018
Related Datasets:
None
Gilzer, D; Niemann, HH. 2022. "X-Ray Diffraction data for: Ternary complex of Yersinia enterocolitica type III secretion (T3S) proteins YscV, YscX and YscY. PDB Code 7QIJ", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/907.
native data
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Dominic Gilzer | Data Collector | Bielefeld University |
| Hartmut H Niemann | Depositor, PI | Bielefeld University |
Only 2800 of the 3600 images were used for refinement. Relevant information can be retrieved from the image header. The XDS.INP file used for processing is given under Processing Bundle.
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97625
Sweep:
SWEEP1
Files:
/programs/datagrid/907/dg046_2_data_1_#####.cbf
Images:
1 - 3600
Beam:
(214.76, 210.8) -> (214.76, 210.31)
Distance:
734.47 -> 734.96
Spacegroup:
P 21 21 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 3.8 | 10.3 | 3.8 |
| Low resolution limit | 61.93 | 61.94 | 3.87 |
| Completeness | 100.0 | 99.9 | 100.0 |
| Multiplicity | 6.7 | 5.9 | 6.9 |
| I/sigma | 6.9 | 24.9 | 0.8 |
| Rmerge | 0.172 | 0.045 | 3.106 |
| CC half | 0.997 | 0.997 | 0.311 |
| Anomalous completeness | 99.1 | 97.9 | 99.8 |
| Anomalous multiplicity | 3.5 | 3.5 | 3.5 |
| Cell | 143.33 | 324.82 | 369.18 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97625
Sweep:
SWEEP1
Files:
/programs/datagrid/907/dg046_2_data_1_#####.cbf
Images:
1 - 3600
Beam:
(214.76, 210.8) -> (214.76, 210.28)
Distance:
734.47 -> 735.44
Spacegroup:
P 21 21 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 3.79 | 10.29 | 3.79 |
| Low resolution limit | 162.41 | 162.56 | 3.86 |
| Completeness | 100.0 | 99.8 | 100.0 |
| Multiplicity | 6.7 | 5.9 | 6.9 |
| I/sigma | 6.9 | 24.8 | 0.8 |
| Rmerge | 0.173 | 0.045 | 3.133 |
| CC half | 0.997 | 0.998 | 0.312 |
| Anomalous completeness | 99.1 | 97.7 | 99.8 |
| Anomalous multiplicity | 3.5 | 3.5 | 3.5 |
| Cell | 143.33 | 324.83 | 369.19 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97625
Sweep:
SWEEP1
Files:
/programs/datagrid/907/dg046_2_data_1_#####.cbf
Images:
1 - 3600
Beam:
(214.76, 210.8) -> (214.76, 210.29)
Distance:
734.47 -> 735.32
Spacegroup:
P 21 21 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 3.67 | 9.96 | 3.67 |
| Low resolution limit | 160.78 | 160.94 | 3.73 |
| Completeness | 99.8 | 100.0 | 95.9 |
| Multiplicity | 6.7 | 6.2 | 7.0 |
| I/sigma | 3.6 | 27.1 | 0.2 |
| Rmerge | 0.195 | 0.067 | 3.047 |
| CC half | 0.986 | 0.981 | 0.196 |
| Anomalous completeness | 99.6 | 100.0 | 95.8 |
| Anomalous multiplicity | 3.5 | 3.5 | 3.5 |
| Cell | 143.675 | 325.173 | 369.96 | 90.0 | 90.0 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
