Data DOI: 10.15785/SBGRID/905 | ID: 905
Publication DOI: 10.1038/s41467-022-30487-1
7QIH Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Niemann Laboratory, Bielefeld University
Release Date: 23 Sep 2022
1. If this dataset is locally available, it should be accessable at /programs/datagrid/905
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/905 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/905 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/905 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/905 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 905 ; shasum -c files.sha'
Storage requirements: 8.4G
Biological Sample:
Complex of Yersinia enterocolitica type III secretion (T3S) proteins YscX and YscY (YscX50:YscY)
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
beamline BL14.2, BESSY II, Helmholtz-Zentrum Berlin fuer Materialien und Energie
Data Creation Date:
28 Nov 2019
Related Datasets:
None
Gilzer, D; Niemann, HH. 2022. "X-Ray Diffraction data for: Complex of Yersinia enterocolitica type III secretion (T3S) proteins YscX and YscY (YscX50:YscY). PDB Code 7QIH", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/905.
native data
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Dominic Gilzer | Data Collector | Bielefeld University |
| Hartmut H Niemann | Depositor, PI | Bielefeld University |
Relevant information can be retrieved from the image header. The XDS.INP file used for processing is given under Processing Bundle.
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9184
Sweep:
SWEEP1
Files:
/programs/datagrid/905/dg132_3_1_####.cbf
Images:
1 - 3600
Beam:
(142.42, 128.48) -> (142.42, 128.69)
Distance:
280.65 -> 279.8
Spacegroup:
P 21 21 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.93 | 5.22 | 1.93 |
| Low resolution limit | 21.73 | 21.73 | 1.96 |
| Completeness | 100.0 | 100.0 | 99.6 |
| Multiplicity | 12.8 | 11.7 | 10.5 |
| I/sigma | 15.0 | 51.7 | 0.6 |
| Rmerge | 0.089 | 0.03 | 3.377 |
| CC half | 1.0 | 1.0 | 0.348 |
| Anomalous completeness | 100.0 | 100.0 | 99.5 |
| Anomalous multiplicity | 6.9 | 6.9 | 6.9 |
| Cell | 41.56 | 59.88 | 140.84 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9184
Sweep:
SWEEP1
Files:
/programs/datagrid/905/dg132_3_1_####.cbf
Images:
1 - 3600
Beam:
(142.42, 128.48) -> (142.42, 128.67)
Distance:
280.65 -> 282.26
Spacegroup:
P 21 21 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.93 | 5.23 | 1.93 |
| Low resolution limit | 28.17 | 28.17 | 1.96 |
| Completeness | 100.0 | 100.0 | 99.7 |
| Multiplicity | 12.8 | 11.6 | 10.4 |
| I/sigma | 15.0 | 51.8 | 0.6 |
| Rmerge | 0.089 | 0.03 | 3.394 |
| CC half | 0.999 | 0.999 | 0.353 |
| Anomalous completeness | 100.0 | 100.0 | 99.5 |
| Anomalous multiplicity | 6.9 | 6.9 | 6.9 |
| Cell | 41.55 | 59.88 | 140.83 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9184
Sweep:
SWEEP1
Files:
/programs/datagrid/905/dg132_3_1_####.cbf
Images:
1 - 3600
Beam:
(142.42, 128.48) -> (142.42, 128.68)
Distance:
280.65 -> 281.04
Spacegroup:
P 21 2 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.87 | 5.07 | 1.87 |
| Low resolution limit | 28.14 | 28.14 | 1.9 |
| Completeness | 99.9 | 100.0 | 96.5 |
| Multiplicity | 12.4 | 11.6 | 7.9 |
| I/sigma | 9.7 | 35.8 | 0.2 |
| Rmerge | 0.117 | 0.082 | 3.54 |
| CC half | 0.996 | 0.995 | 0.367 |
| Anomalous completeness | 99.6 | 100.0 | 94.7 |
| Anomalous multiplicity | 6.6 | 6.6 | 6.6 |
| Cell | 41.499 | 59.809 | 140.697 | 90.0 | 90.0 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
