Data DOI: 10.15785/SBGRID/903 | ID: 903
Publication DOI: 10.1128/JB.00872-15
5IC5 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Forest Laboratory, University of Wisconsin-Madison
Release Date: April 15, 2022
1. If this dataset is locally available, it should be accessable at /programs/datagrid/903
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/903 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/903 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/903 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/903 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 903 ; shasum -c files.sha'
Storage requirements: 12G
Biological Sample:
Bacteriophytochrome Response Regulator RtBrr
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
Advanced Photon Source, LS-Cat, 21-ID_D
Data Creation Date:
Oct. 10, 2013
Related Datasets:
None
Satyshur, KA; Baker, AW; Forest, KT. 2022. "X-Ray Diffraction data for: Bacteriophytochrome Response Regulator RtBrr. PDB Code 5IC5", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/903.
720 frames were collected at 1 degree/frame but only 360 were used. Contains both Zn and Cacodylate molecules (As) and has an anomalous signal.
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Kenneth A Satyshur | Data Collector, Depositor | Sinor Scientist |
| Anna W Baker | Data Collector | Graduate Student |
| Katrina T Forest | PI | University of Wisconsin-Madison |
Keep Friedel mates separate since there is an anomalous signal. The wavelength is at 0.97910 so both Zn and As have a signal. Contains a unique protein Metal Organic Framework structure on the C-terminal His tag.
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9791
Sweep:
SWEEP1
Files:
/programs/datagrid/903/AB3_4_no2.###
Images:
1 - 360
Beam:
(150.0, 150.0) -> (150.0, 149.88)
Distance:
250.0 -> 249.12
Spacegroup:
P 41 2 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.8 | 4.88 | 1.8 |
| Low resolution limit | 38.34 | 38.35 | 1.83 |
| Completeness | 100.0 | 100.0 | 100.0 |
| Multiplicity | 27.2 | 21.8 | 23.8 |
| I/sigma | 18.6 | 53.5 | 0.7 |
| Rmerge | 0.111 | 0.046 | 5.349 |
| CC half | 0.999 | 0.999 | 0.317 |
| Anomalous completeness | 100.0 | 100.0 | 99.9 |
| Anomalous multiplicity | 15.0 | 15.0 | 15.0 |
| Cell | 47.7 | 47.7 | 193.37 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9791
Sweep:
SWEEP1
Files:
/programs/datagrid/903/AB3_4_no2.###
Images:
1 - 360
Beam:
(150.0, 150.0) -> (150.0, 149.89)
Distance:
250.0 -> 249.77
Spacegroup:
P 41 2 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.8 | 4.88 | 1.8 |
| Low resolution limit | 38.34 | 38.35 | 1.83 |
| Completeness | 100.0 | 100.0 | 100.0 |
| Multiplicity | 27.2 | 21.8 | 23.8 |
| I/sigma | 18.6 | 53.5 | 0.7 |
| Rmerge | 0.111 | 0.046 | 5.346 |
| CC half | 0.999 | 0.999 | 0.328 |
| Anomalous completeness | 100.0 | 100.0 | 99.9 |
| Anomalous multiplicity | 15.0 | 15.0 | 15.0 |
| Cell | 47.7 | 47.7 | 193.37 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9791
Sweep:
SWEEP1
Files:
/programs/datagrid/903/AB3_4_no2.###
Images:
1 - 360
Beam:
(150.0, 150.0) -> (150.0, 149.97)
Distance:
250.0 -> 249.2
Spacegroup:
P 41 2 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.63 | 4.44 | 1.63 |
| Low resolution limit | 193.58 | 194.96 | 1.66 |
| Completeness | 99.8 | 100.0 | 91.7 |
| Multiplicity | 24.4 | 24.7 | 10.3 |
| I/sigma | 9.6 | 57.7 | 2.1 |
| Rmerge | 0.146 | 0.063 | 2.566 |
| CC half | 0.992 | 0.999 | 0.342 |
| Anomalous completeness | 99.6 | 100.0 | 94.2 |
| Anomalous multiplicity | 13.3 | 13.3 | 13.3 |
| Cell | 47.761 | 47.761 | 193.585 | 90.0 | 90.0 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
