X-Ray Diffraction data from Orsay virus-like particle, source of 4NWV structure

Data DOI: 10.15785/SBGRID/9 | ID: 9

Publication DOI: 10.1073/pnas.1407122111

4NWV Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Tao Laboratory, Rice University

Release Date: 20 Apr 2015

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/9

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/9 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/9 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/9 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/9 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 9 ; shasum -c files.sha'

Storage requirements: 16G

Biological Sample:

Orsay virus-like particle

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

APS BEAMLINE 21-ID-D

Data Creation Date:

10 Jun 2012

Related Datasets:

None


Cite this Dataset

Guo, YR; Tao, Y. 2015. "X-Ray Diffraction data for: Orsay virus-like particle. PDB Code 4NWV", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/9.

Download Citation

Dataset Description

Collection temperature 100K Wavelength 1.1271Å

Project Members

Name Additional Roles Affiliation While Working on the Project
Yusong R GuoData Collector, DepositorRice University
Yizhi (Jane) TaoPIRice University

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.12706

Sweep:

SWEEP1

Files:

/programs/datagrid/9/formal.###

Images:

1 - 500

Beam:

(149.95, 149.96) -> (149.95, 149.96)

Distance:

280.0 -> 279.1

Spacegroup:

I 2 2 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.16 8.57 3.16
Low resolution limit 84.41 84.44 3.21
Completeness 98.9 96.4 99.7
Multiplicity 4.2 4.1 4.2
I/sigma 6.8 23.4 1.2
Rmerge 0.259 0.034 1.799
CC half 0.963 0.998 0.293
Anomalous completeness 93.9 91.7 96.3
Anomalous multiplicity 2.2 2.2 2.2
Cell 370.44 402.82 410.26 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.12706

Sweep:

SWEEP1

Files:

/programs/datagrid/9/formal.###

Images:

1 - 500

Beam:

(149.95, 149.96) -> (149.95, 149.96)

Distance:

280.0 -> 279.37

Spacegroup:

I 2 2 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 4.45 12.07 4.45
Low resolution limit 102.32 102.35 4.53
Completeness 98.1 95.2 98.9
Multiplicity 4.2 4.0 4.2
I/sigma 13.1 26.2 9.1
Rmerge 0.086 0.03 0.151
CC half 0.993 0.997 0.975
Anomalous completeness 92.2 90.5 92.3
Anomalous multiplicity 2.2 2.2 2.2
Cell 370.45 402.83 410.27 90.0 90.0 90.0

Version:

version unreported

Reprocessing failed.

This dataset is part of the SBDB Pilot Reference Collection, and has processed intensities available from that collection.

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.