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X-Ray Diffraction data from MAPK13 in complex with inhibitor 124, source of 4EYM structure

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Data DOI: 10.15785/SBGRID/89 | ID: 89

Publication DOI: 10.1172/JCI64896

4EYM Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Brett Laboratory, Washington U. School of Medicine

Release Date: 19 May 2015

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/89

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/89 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/89 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/89 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/89 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 89 ; shasum -c files.sha'

Storage requirements: 1.5G

Biological Sample:

MAPK13 in complex with inhibitor 124

Dataset Type:

X-Ray Diffraction

Subject Composition:

Ligand, Protein

Collection Facility:

ALS 4.2.2

Data Creation Date:

29 Sep 2011

Related Datasets:

None


Cite this Dataset

Brett, TJ; Brett, T. 2015. "X-Ray Diffraction data for: MAPK13 in complex with inhibitor 124. PDB Code 4EYM", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/89.

Download Citation

Dataset Description

hi res data

Project Members

Name Additional Roles Affiliation While Working on the Project
Thomas J BrettData Collector, DepositorWashington University School of Medicine
Tom BrettPIWashington U. School of Medicine

Reprocessing Instructions

HKL2000

Reprocessing Data

About Reprocessing

xia2 -2d

xia2 -3d

xia2 -3dii

xia2 -dials
/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=3d reverse_phi=True /programs/datagrid//89/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.038

Sweep:

SWEEP1

Files:

/programs/datagrid/89/d124_5_1_###.img

Images:

1 - 180

Beam:

(79.07, 77.9) -> (79.07, 77.75)

Distance:

-150.0 -> -150.08

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.13 5.77 2.13
Low resolution limit 38.77 38.78 2.16
Completeness 93.7 100.0 59.2
Multiplicity 5.9 6.1 2.2
I/sigma 12.0 23.0 1.4
Rmerge 0.105 0.047 0.418
CC half 0.99 0.999 -0.065
Anomalous completeness 86.7 99.7 35.2
Anomalous multiplicity 3.3 3.3 3.3
Cell 61.22 69.68 93.32 90.0 90.0 90.0
/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=3dii reverse_phi=True /programs/datagrid//89/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.038

Sweep:

SWEEP1

Files:

/programs/datagrid/89/d124_5_1_###.img

Images:

1 - 180

Beam:

(79.07, 77.9) -> (79.07, 77.75)

Distance:

-150.0 -> -150.02

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.13 5.77 2.13
Low resolution limit 55.82 55.84 2.16
Completeness 93.1 100.0 57.9
Multiplicity 5.9 6.0 2.2
I/sigma 12.3 22.7 1.6
Rmerge 0.101 0.046 0.333
CC half 0.99 0.998 -0.03
Anomalous completeness 85.7 99.8 33.3
Anomalous multiplicity 3.3 3.3 3.3
Cell 61.2 69.66 93.3 90.0 90.0 90.0
/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=dials reverse_phi=True /programs/datagrid//89/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.


License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.