Data DOI: 10.15785/SBGRID/885 | ID: 885
7QTB Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Dohnalek Laboratory, Institute of Biotechnology of the Czech Academy of Sciences
Release Date: 1 Apr 2022
1. If this dataset is locally available, it should be accessable at /programs/datagrid/885
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/885 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/885 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/885 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/885 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 885 ; shasum -c files.sha'
Storage requirements: 21G
Biological Sample:
S1 nuclease in complex with cytidine-5'-monophosphate
Dataset Type:
X-Ray Diffraction
Subject Composition:
Ligand, Protein
Collection Facility:
Petra III, BL P13, DESY, Hamburg
Data Creation Date:
18 Oct 2016
Related Datasets:
None
Adamkova, K; Kolenko, P; Koval, T; Oestergaard, LH.; Dohnalek, J. 2022. "X-Ray Diffraction data for: S1 nuclease in complex with cytidine-5'-monophosphate. PDB Code 7QTB", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/885.
native datasets
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Kristyna Adamkova | Data Collector, Depositor | Institute of Biotechnology of the Czech Academy of Sciences, v.v.i |
| Jan Dohnalek | Data Collector | Institute of Biotechnology of the Czech Academy of Sciences, v.v.i |
| Petr Kolenko | Data Collector | Faculty of Nuclear Sciences and Physical Engineering |
| Tomas Koval | Data Collector | Institute of Biotechnology of the Czech Academy of Sciences, v.v.i |
| Lars H. Oestergaard | Novozymes A/S | |
| Jan Dohnalek | PI | Institute of Biotechnology of the Czech Academy of Sciences |
none
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.0332
Sweep:
SWEEP1
Files:
/programs/datagrid/885/skr6-go_w1_2_#####.cbf
Images:
1 - 3600
Beam:
(216.76, 210.27) -> (216.76, 210.15)
Distance:
141.71 -> 141.86
Spacegroup:
P 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 0.96 | 2.61 | 0.96 |
| Low resolution limit | 21.56 | 21.57 | 0.98 |
| Completeness | 70.1 | 92.9 | 3.7 |
| Multiplicity | 3.6 | 3.6 | 2.6 |
| I/sigma | 15.2 | 47.0 | 1.0 |
| Rmerge | 0.029 | 0.015 | 0.752 |
| CC half | 0.999 | 0.999 | 0.509 |
| Anomalous completeness | 63.9 | 82.5 | 2.7 |
| Anomalous multiplicity | 1.9 | 1.9 | 1.9 |
| Cell | 43.08 | 48.46 | 65.55 | 107.47 | 90.08 | 105.7 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.0332
Sweep:
SWEEP1
Files:
/programs/datagrid/885/skr6-go_w1_2_#####.cbf
Images:
1 - 3600
Beam:
(216.76, 210.27) -> (216.76, 212.36)
Distance:
141.71 -> 141.87
Spacegroup:
P 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 0.95 | 2.58 | 0.95 |
| Low resolution limit | 18.28 | 18.29 | 0.97 |
| Completeness | 70.9 | 95.4 | 2.2 |
| Multiplicity | 3.3 | 3.1 | 1.1 |
| I/sigma | 0.7 | 1.8 | -0.1 |
| Rmerge | 0.393 | 0.289 | 1.069 |
| CC half | 0.692 | 0.602 | -0.017 |
| Anomalous completeness | 59.6 | 74.5 | 0.1 |
| Anomalous multiplicity | 1.8 | 1.8 | 1.8 |
| Cell | 32.78 | 43.09 | 48.87 | 102.76 | 109.45 | 90.03 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.0332
Sweep:
SWEEP1
Files:
/programs/datagrid/885/skr6-go_w1_2_#####.cbf
Images:
1 - 3600
Beam:
(216.76, 210.27) -> (216.76, 210.15)
Distance:
141.71 -> 141.92
Spacegroup:
P 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 0.96 | 2.61 | 0.96 |
| Low resolution limit | 44.3 | 44.35 | 0.98 |
| Completeness | 70.2 | 94.7 | 3.8 |
| Multiplicity | 3.7 | 3.8 | 3.3 |
| I/sigma | 12.2 | 49.3 | 0.3 |
| Rmerge | 0.05 | 0.036 | 0.984 |
| CC half | 0.993 | 0.988 | 0.131 |
| Anomalous completeness | 66.9 | 91.1 | 3.1 |
| Anomalous multiplicity | 1.9 | 1.9 | 1.9 |
| Cell | 43.094 | 48.415 | 65.562 | 72.587 | 89.933 | 74.281 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
