X-Ray Diffraction data from yeast aminopeptidase 1, source of 4R8F structure

Data DOI: 10.15785/SBGRID/87 | ID: 87

4R8F Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Chang Laboratory, Academia Sinica

Release Date: May 26, 2015

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/87

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/87 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/87 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/87 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/87 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 87 ; shasum -c files.sha'

Storage requirements: 3.8G

Biological Sample:

yeast aminopeptidase 1

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

NSRRC BL15A

Data Creation Date:

June 19, 2014

Related Datasets:

None


Cite this Dataset

Su, M; Chang, C. 2015. "X-Ray Diffraction data for: yeast aminopeptidase 1. PDB Code 4R8F", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/87.

Download Citation

Dataset Description

None

Project Members

Name Additional Roles Affiliation While Working on the Project
Ming-Yuan SuData Collector, DepositorInstitute of Biological Chemistry, Academia Sinica
Chung-I ChangInstitute of Biological Chemistry, Academia Sinica
Chung-I ChangPIAcademia Sinica

Reprocessing Instructions

None

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.0

Sweep:

SWEEP1

Files:

/programs/datagrid/87/p23_Ape1_8_10_###.mccd

Images:

1 - 120

Beam:

(150.0, 150.0) -> (150.0, 150.03)

Distance:

320.0 -> 319.72

Spacegroup:

H 3

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.16 5.86 2.16
Low resolution limit 70.78 70.82 2.2
Completeness 96.7 99.5 76.1
Multiplicity 3.1 3.8 2.0
I/sigma 8.5 28.6 1.0
Rmerge 0.079 0.05 0.715
CC half 0.991 0.978 0.362
Anomalous completeness 85.9 98.6 48.4
Anomalous multiplicity 1.6 1.6 1.6
Cell 140.109 140.109 348.551 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.0

Sweep:

SWEEP1

Files:

/programs/datagrid/87/p23_Ape1_8_10_###.mccd

Images:

1 - 120

Beam:

(150.0, 150.0) -> (150.0, 149.91)

Distance:

320.0 -> 321.35

Spacegroup:

H 3

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.25 6.1 2.25
Low resolution limit 33.93 33.93 2.29
Completeness 99.4 96.8 98.3
Multiplicity 3.8 3.6 3.1
I/sigma 11.6 35.8 1.1
Rmerge 0.06 0.022 0.974
CC half 0.998 0.997 0.41
Anomalous completeness 95.0 86.8 83.2
Anomalous multiplicity 1.9 1.9 1.9
Cell 140.29 140.29 348.86 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.0

Sweep:

SWEEP1

Files:

/programs/datagrid/87/p23_Ape1_8_10_###.mccd

Images:

1 - 120

Beam:

(150.0, 150.0) -> (150.0, 149.91)

Distance:

320.0 -> 320.5

Spacegroup:

H 3

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.24 6.07 2.24
Low resolution limit 31.43 31.44 2.28
Completeness 99.3 96.8 97.4
Multiplicity 3.8 3.6 3.0
I/sigma 11.5 35.7 1.0
Rmerge 0.06 0.022 0.978
CC half 0.998 0.997 0.404
Anomalous completeness 94.7 86.9 80.5
Anomalous multiplicity 1.9 1.9 1.9
Cell 140.29 140.29 348.85 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.0

Sweep:

SWEEP1

Files:

/programs/datagrid/87/p23_Ape1_8_10_###.mccd

Images:

1 - 120

Beam:

(150.0, 150.0) -> (150.0, 150.0)

Distance:

320.0 -> 322.92

Spacegroup:

H 3

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.26 6.13 2.26
Low resolution limit 46.48 46.49 2.3
Completeness 99.6 99.5 93.5
Multiplicity 3.8 3.8 2.9
I/sigma 5.7 12.9 1.0
Rmerge 0.101 0.075 0.908
CC half 0.983 0.953 0.519
Anomalous completeness 97.7 98.7 76.1
Anomalous multiplicity 1.9 1.9 1.9
Cell 141.282 141.282 351.772 90.0 90.0 120.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.