X-Ray Diffraction data from yeast aminopeptidase 1, source of 4R8F structure

Data DOI: 10.15785/SBGRID/87 | ID: 87

4R8F Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Chang Laboratory, Academia Sinica

Release Date: May 26, 2015

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/87

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/87 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/87 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/87 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/87 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 87 ; shasum -c files.sha'

Storage requirements: 3.8G

Biological Sample:

yeast aminopeptidase 1

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

NSRRC BL15A

Data Creation Date:

June 19, 2014

Related Datasets:

None


Cite this Dataset

Su, M; Chang, C. 2015. "X-Ray Diffraction data for: yeast aminopeptidase 1. PDB Code 4R8F", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/87.

Download Citation

Dataset Description

None

Project Members

Name Additional Roles Affiliation While Working on the Project
Ming-Yuan SuData Collector, DepositorInstitute of Biological Chemistry, Academia Sinica
Chung-I ChangInstitute of Biological Chemistry, Academia Sinica
Chung-I ChangPIAcademia Sinica

Reprocessing Instructions

None

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.0

Sweep:

SWEEP1

Files:

/programs/datagrid/87/p23_Ape1_8_10_###.mccd

Images:

1 - 120

Beam:

(150.0, 150.0) -> (150.0, 149.91)

Distance:

320.0 -> 321.0

Spacegroup:

H 3

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.17 5.88 2.17
Low resolution limit 30.34 30.34 2.21
Completeness 98.7 96.9 89.7
Multiplicity 3.7 3.6 2.6
I/sigma 10.6 35.8 0.8
Rmerge 0.062 0.022 1.217
CC half 0.998 0.997 0.295
Anomalous completeness 92.5 87.5 67.6
Anomalous multiplicity 1.9 1.9 1.9
Cell 140.28 140.28 348.85 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.0

Sweep:

SWEEP1

Files:

/programs/datagrid/87/p23_Ape1_8_10_###.mccd

Images:

1 - 120

Beam:

(150.0, 150.0) -> (150.0, 149.91)

Distance:

320.0 -> 320.5

Spacegroup:

H 3

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.17 5.88 2.17
Low resolution limit 31.43 31.44 2.21
Completeness 98.6 96.9 89.7
Multiplicity 3.7 3.6 2.6
I/sigma 10.6 35.8 0.8
Rmerge 0.062 0.022 1.214
CC half 0.998 0.997 0.299
Anomalous completeness 92.5 87.4 67.6
Anomalous multiplicity 1.9 1.9 1.9
Cell 140.29 140.29 348.85 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.0

Sweep:

SWEEP1

Files:

/programs/datagrid/87/p23_Ape1_8_10_###.mccd

Images:

1 - 120

Beam:

(150.0, 150.0) -> (150.0, 150.01)

Distance:

320.0 -> 322.85

Spacegroup:

R 3

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.83 4.96 1.83
Low resolution limit 35.6 35.6 1.86
Completeness 80.9 99.6 26.0
Multiplicity 3.2 3.9 1.5
I/sigma 4.1 14.3 1.6
Rmerge 0.583 0.066 0.877
CC half 0.441 0.935 0.593
Anomalous completeness 68.1 98.8 12.6
Anomalous multiplicity 1.7 1.7 1.7
Cell 140.853 140.853 350.716 90.0 90.0 120.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.