Data DOI: 10.15785/SBGRID/87 | ID: 87
4R8F Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Chang Laboratory, Academia Sinica
Release Date: 26 May 2015
1. If this dataset is locally available, it should be accessable at /programs/datagrid/87
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/87 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/87 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/87 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/87 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 87 ; shasum -c files.sha'
Storage requirements: 3.8G
Biological Sample:
yeast aminopeptidase 1
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
NSRRC BL15A
Data Creation Date:
19 Jun 2014
Related Datasets:
None
Su, M; Chang, C. 2015. "X-Ray Diffraction data for: yeast aminopeptidase 1. PDB Code 4R8F", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/87.
None
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Ming-Yuan Su | Data Collector, Depositor | Institute of Biological Chemistry, Academia Sinica |
| Chung-I Chang | Institute of Biological Chemistry, Academia Sinica | |
| Chung-I Chang | PI | Academia Sinica |
None
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.0
Sweep:
SWEEP1
Files:
/programs/datagrid/87/p23_Ape1_8_10_###.mccd
Images:
1 - 120
Beam:
(150.0, 150.0) -> (150.0, 149.91)
Distance:
320.0 -> 321.0
Spacegroup:
H 3
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.17 | 5.88 | 2.17 |
| Low resolution limit | 30.34 | 30.34 | 2.21 |
| Completeness | 98.7 | 96.9 | 89.7 |
| Multiplicity | 3.7 | 3.6 | 2.6 |
| I/sigma | 10.6 | 35.8 | 0.8 |
| Rmerge | 0.062 | 0.022 | 1.217 |
| CC half | 0.998 | 0.997 | 0.295 |
| Anomalous completeness | 92.5 | 87.5 | 67.6 |
| Anomalous multiplicity | 1.9 | 1.9 | 1.9 |
| Cell | 140.28 | 140.28 | 348.85 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.0
Sweep:
SWEEP1
Files:
/programs/datagrid/87/p23_Ape1_8_10_###.mccd
Images:
1 - 120
Beam:
(150.0, 150.0) -> (150.0, 149.91)
Distance:
320.0 -> 320.5
Spacegroup:
H 3
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.17 | 5.88 | 2.17 |
| Low resolution limit | 31.43 | 31.44 | 2.21 |
| Completeness | 98.6 | 96.9 | 89.7 |
| Multiplicity | 3.7 | 3.6 | 2.6 |
| I/sigma | 10.6 | 35.8 | 0.8 |
| Rmerge | 0.062 | 0.022 | 1.214 |
| CC half | 0.998 | 0.997 | 0.299 |
| Anomalous completeness | 92.5 | 87.4 | 67.6 |
| Anomalous multiplicity | 1.9 | 1.9 | 1.9 |
| Cell | 140.29 | 140.29 | 348.85 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.0
Sweep:
SWEEP1
Files:
/programs/datagrid/87/p23_Ape1_8_10_###.mccd
Images:
1 - 120
Beam:
(150.0, 150.0) -> (150.0, 150.01)
Distance:
320.0 -> 322.85
Spacegroup:
R 3
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.83 | 4.96 | 1.83 |
| Low resolution limit | 35.6 | 35.6 | 1.86 |
| Completeness | 80.9 | 99.6 | 26.0 |
| Multiplicity | 3.2 | 3.9 | 1.5 |
| I/sigma | 4.1 | 14.3 | 1.6 |
| Rmerge | 0.583 | 0.066 | 0.877 |
| CC half | 0.441 | 0.935 | 0.593 |
| Anomalous completeness | 68.1 | 98.8 | 12.6 |
| Anomalous multiplicity | 1.7 | 1.7 | 1.7 |
| Cell | 140.853 | 140.853 | 350.716 | 90.0 | 90.0 | 120.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
