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X-Ray Diffraction data from Human Coproporphyrinogen Oxidase, source of 2AEX structure

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Data DOI: 10.15785/SBGRID/85 | ID: 85

Publication DOI: 10.1073/pnas.0506557102

2AEX Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Raman Laboratory, University of Maryland

Release Date: 13 May 2015

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/85

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/85 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/85 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/85 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/85 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 85 ; shasum -c files.sha'

Storage requirements: 1.6G

Biological Sample:

Human Coproporphyrinogen Oxidase

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

BL 9-2 Stanford Synchrotron Radiation Laboratories

Data Creation Date:

3 Jul 2002

Related Datasets:

None


Cite this Dataset

Lee, D; Raman, CS. 2015. "X-Ray Diffraction data for: Human Coproporphyrinogen Oxidase. PDB Code 2AEX", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/85.

Download Citation

Dataset Description

This is the native data set obtained in two passes and requires merging to generate the complete dataset: hn_18: high resolution data (low res region masked with an aluminum disk) extending to 1.58 A or better hn_19: low resolution data (unattenuated) and can be readily merged to 1.8 A.

Project Members

Name Additional Roles Affiliation While Working on the Project
C S RamanData Collector, DepositorUniversity of Texas Medical School, Houston
Dong-Sun LeeData CollectorUniversity of Texas Medical School, Houston
C S RamanPIUniversity of Maryland

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

xia2 -2d

xia2 -3d

xia2 -3dii

xia2 -dials
/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=3d /programs/datagrid//85/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=3dii /programs/datagrid//85/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=dials /programs/datagrid//85/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.95369

Sweep:

SWEEP2

Files:

/programs/datagrid/85/hnlo_19_###.img

Images:

1 - 45

Beam:

(157.5, 157.5) -> (157.5, 157.45)

Distance:

180.0 -> 179.76

Spacegroup:

P 2 3

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.37 3.72 1.37
Low resolution limit 39.87 39.89 1.39
Completeness 100.0 99.7 100.0
Multiplicity 10.7 10.0 11.0
I/sigma 4.6 28.2 0.1
Rmerge 6.908 0.173 -23.547
CC half 0.549 0.986 0.0
Anomalous completeness 97.9 97.6 96.8
Anomalous multiplicity 5.5 5.5 5.5
Cell 112.78 112.78 112.78 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.