X-Ray Diffraction data from IL23/IL23R/IL12Rb1 signaling complex, source of 6WDQ structure

Data DOI: 10.15785/SBGRID/829 | ID: 829

Publication DOI: https://doi.org/10.1016/j.cell.2021.01.018

6WDQ Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Garcia Laboratory, Stanford University

Release Date: April 27, 2021

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/829

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/829 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/829 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/829 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/829 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 829 ; shasum -c files.sha'

Storage requirements: 1.1G

Biological Sample:

IL23/IL23R/IL12Rb1 signaling complex

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

SSRL beamline 12-2

Data Creation Date:

May 23, 2011

Related Datasets:

None


Cite this Dataset

Jude, KM; Ely, LK; Garcia, KC; Glassman, CR; Lupardus, PJ; Spangler, JB; Thomas, C; Garcia, K. 2021. "X-Ray Diffraction data for: IL23/IL23R/IL12Rb1 signaling complex. PDB Code 6WDQ", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/829.

Download Citation

Dataset Description

native

Project Members

Name Additional Roles Affiliation While Working on the Project
Kevin M JudeDepositorHHMI/Stanford University
Lauren K ElyStanford University
K C GarciaHHMI/Stanford University
Caleb R GlassmanStanford University
Patrick J LupardusStanford University
Jamie B SpanglerStanford University
Christoph ThomasData CollectorStanford University
K. Christopher GarciaPIStanford University

Reprocessing Instructions

crystals 1 and 2 were integrated and scaled separately with XDS and merged with aimless

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.0

Sweep:

SWEEP2

Files:

/programs/datagrid/829/c_lD2_2_#####.cbf

Images:

1 - 69

Beam:

(217.32, 211.82) -> (217.32, 211.77)

Distance:

600.0 -> 599.25

Spacegroup:

P 21 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.46 9.39 3.46
Low resolution limit 99.95 100.0 3.52
Completeness 98.6 99.5 98.4
Multiplicity 5.3 5.8 2.7
I/sigma 7.4 29.8 0.6
Rmerge 0.136 0.039 1.621
CC half 0.998 0.997 0.248
Anomalous completeness 94.1 97.6 85.3
Anomalous multiplicity 2.9 2.9 2.9
Cell 118.54 185.93 76.07 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.0

Sweep:

SWEEP2

Files:

/programs/datagrid/829/c_lD2_2_#####.cbf

Images:

1 - 69

Beam:

(217.32, 211.82) -> (217.32, 211.76)

Distance:

600.0 -> 597.02

Spacegroup:

P 21 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.46 9.39 3.46
Low resolution limit 99.95 100.0 3.52
Completeness 98.6 99.5 98.4
Multiplicity 5.3 5.8 2.7
I/sigma 7.4 29.8 0.6
Rmerge 0.136 0.039 1.624
CC half 0.998 0.997 0.251
Anomalous completeness 94.1 97.5 85.3
Anomalous multiplicity 2.9 2.9 2.9
Cell 118.54 185.93 76.07 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.0

Sweep:

SWEEP2

Files:

/programs/datagrid/829/c_lD2_2_#####.cbf

Images:

1 - 69

Beam:

(217.32, 211.82) -> (217.32, 211.76)

Distance:

600.0 -> 596.73

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.3 8.95 3.3
Low resolution limit 118.95 119.03 3.35
Completeness 72.0 70.7 27.5
Multiplicity 4.5 4.8 5.2
I/sigma 6.1 54.4 0.3
Rmerge 0.204 0.062 8.595
CC half 0.879 0.856 0.107
Anomalous completeness 62.8 66.1 26.6
Anomalous multiplicity 2.4 2.4 2.4
Cell 75.973 184.177 119.074 90.0 87.429 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.