Data DOI: 10.15785/SBGRID/829 | ID: 829
Publication DOI: https://doi.org/10.1016/j.cell.2021.01.018
6WDQ Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Garcia Laboratory, Stanford University
Release Date: 27 Apr 2021
1. If this dataset is locally available, it should be accessable at /programs/datagrid/829
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/829 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/829 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/829 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/829 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 829 ; shasum -c files.sha'
Storage requirements: 1.1G
Biological Sample:
IL23/IL23R/IL12Rb1 signaling complex
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
SSRL beamline 12-2
Data Creation Date:
23 May 2011
Related Datasets:
None
Jude, KM; Ely, LK; Garcia, KC; Glassman, CR; Lupardus, PJ; Spangler, JB; Thomas, C; Garcia, K. 2021. "X-Ray Diffraction data for: IL23/IL23R/IL12Rb1 signaling complex. PDB Code 6WDQ", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/829.
native
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Kevin M Jude | Depositor | HHMI/Stanford University |
| Lauren K Ely | Stanford University | |
| K C Garcia | HHMI/Stanford University | |
| Caleb R Glassman | Stanford University | |
| Patrick J Lupardus | Stanford University | |
| Jamie B Spangler | Stanford University | |
| Christoph Thomas | Data Collector | Stanford University |
| K. Christopher Garcia | PI | Stanford University |
crystals 1 and 2 were integrated and scaled separately with XDS and merged with aimless
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.0
Sweep:
SWEEP2
Files:
/programs/datagrid/829/c_lD2_2_#####.cbf
Images:
1 - 69
Beam:
(217.32, 211.82) -> (217.32, 211.77)
Distance:
600.0 -> 599.25
Spacegroup:
P 21 21 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 3.46 | 9.39 | 3.46 |
| Low resolution limit | 99.95 | 100.0 | 3.52 |
| Completeness | 98.6 | 99.5 | 98.4 |
| Multiplicity | 5.3 | 5.8 | 2.7 |
| I/sigma | 7.4 | 29.8 | 0.6 |
| Rmerge | 0.136 | 0.039 | 1.621 |
| CC half | 0.998 | 0.997 | 0.248 |
| Anomalous completeness | 94.1 | 97.6 | 85.3 |
| Anomalous multiplicity | 2.9 | 2.9 | 2.9 |
| Cell | 118.54 | 185.93 | 76.07 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.0
Sweep:
SWEEP2
Files:
/programs/datagrid/829/c_lD2_2_#####.cbf
Images:
1 - 69
Beam:
(217.32, 211.82) -> (217.32, 211.76)
Distance:
600.0 -> 597.02
Spacegroup:
P 21 21 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 3.46 | 9.39 | 3.46 |
| Low resolution limit | 99.95 | 100.0 | 3.52 |
| Completeness | 98.6 | 99.5 | 98.4 |
| Multiplicity | 5.3 | 5.8 | 2.7 |
| I/sigma | 7.4 | 29.8 | 0.6 |
| Rmerge | 0.136 | 0.039 | 1.624 |
| CC half | 0.998 | 0.997 | 0.251 |
| Anomalous completeness | 94.1 | 97.5 | 85.3 |
| Anomalous multiplicity | 2.9 | 2.9 | 2.9 |
| Cell | 118.54 | 185.93 | 76.07 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.0
Sweep:
SWEEP2
Files:
/programs/datagrid/829/c_lD2_2_#####.cbf
Images:
1 - 69
Beam:
(217.32, 211.82) -> (217.32, 211.76)
Distance:
600.0 -> 596.73
Spacegroup:
P 1 21 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 3.3 | 8.95 | 3.3 |
| Low resolution limit | 118.95 | 119.03 | 3.35 |
| Completeness | 72.0 | 70.7 | 27.5 |
| Multiplicity | 4.5 | 4.8 | 5.2 |
| I/sigma | 6.1 | 54.4 | 0.3 |
| Rmerge | 0.204 | 0.062 | 8.595 |
| CC half | 0.879 | 0.856 | 0.107 |
| Anomalous completeness | 62.8 | 66.1 | 26.6 |
| Anomalous multiplicity | 2.4 | 2.4 | 2.4 |
| Cell | 75.973 | 184.177 | 119.074 | 90.0 | 87.429 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
