X-Ray Diffraction data from Hsa Siglec and Unique domains in complex with sialyl Lewis C, source of 7KMJ structure

Data DOI: 10.15785/SBGRID/813 | ID: 813

7KMJ Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Iverson Laboratory, Vanderbilt University

Release Date: Jan. 4, 2022

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/813

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/813 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/813 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/813 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/813 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 813 ; shasum -c files.sha'

Storage requirements: 11G

Biological Sample:

Hsa Siglec and Unique domains in complex with sialyl Lewis C

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

SSRL 9-2

Data Creation Date:

Nov. 21, 2019

Related Datasets:

None


Cite this Dataset

Stubbs, HE; Iverson, TM; Iverson, T. 2022. "X-Ray Diffraction data for: Hsa Siglec and Unique domains in complex with sialyl Lewis C. PDB Code 7KMJ", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/813.

Download Citation

Dataset Description

raw diffraction data

Project Members

Name Additional Roles Affiliation While Working on the Project
Haley E StubbsDepositorVanderbilt University
T M IversonData CollectorVanderbilt University
Tina IversonPIVanderbilt University

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97946

Sweep:

SWEEP1

Files:

/programs/datagrid/813/sa15Hsa14_11_#####.cbf

Images:

1 - 1800

Beam:

(217.32, 211.82) -> (217.32, 211.7)

Distance:

200.0 -> 208.11

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.75 4.75 1.75
Low resolution limit 40.37 40.38 1.78
Completeness 99.8 100.0 98.8
Multiplicity 9.6 11.5 7.7
I/sigma 2.1 6.2 0.4
Rmerge 0.431 0.222 2.193
CC half 0.963 0.975 0.493
Anomalous completeness 98.5 100.0 96.7
Anomalous multiplicity 5.1 5.1 5.1
Cell 47.08 59.6 78.43 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97946

Sweep:

SWEEP1

Files:

/programs/datagrid/813/sa15Hsa14_11_#####.cbf

Images:

1 - 1800

Beam:

(217.32, 211.82) -> (217.32, 211.73)

Distance:

200.0 -> 200.28

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.13 3.07 1.13
Low resolution limit 46.01 46.05 1.15
Completeness 98.8 100.0 85.0
Multiplicity 11.5 11.5 5.7
I/sigma 10.4 34.1 0.5
Rmerge 0.079 0.053 2.749
CC half 0.998 0.997 0.415
Anomalous completeness 98.3 99.9 81.2
Anomalous multiplicity 6.0 6.0 6.0
Cell 45.96 57.85 75.89 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97946

Sweep:

SWEEP1

Files:

/programs/datagrid/813/sa15Hsa14_11_#####.cbf

Images:

1 - 1800

Beam:

(217.32, 211.82) -> (217.32, 211.73)

Distance:

200.0 -> 200.4

Spacegroup:

C 2 2 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.13 3.07 1.13
Low resolution limit 46.62 46.66 1.15
Completeness 98.7 100.0 84.6
Multiplicity 11.9 13.0 5.7
I/sigma 1.9 19.3 0.0
Rmerge 0.123 0.075 6.304
CC half 0.998 0.997 0.39
Anomalous completeness 98.2 100.0 80.8
Anomalous multiplicity 6.1 6.1 6.1
Cell 91.965 151.893 57.879 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.