Data DOI: 10.15785/SBGRID/813 | ID: 813
7KMJ Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Iverson Laboratory, Vanderbilt University
Release Date: 4 Jan 2022
1. If this dataset is locally available, it should be accessable at /programs/datagrid/813
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/813 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/813 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/813 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/813 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 813 ; shasum -c files.sha'
Storage requirements: 11G
Biological Sample:
Hsa Siglec and Unique domains in complex with sialyl Lewis C
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
SSRL 9-2
Data Creation Date:
21 Nov 2019
Related Datasets:
None
Stubbs, HE; Iverson, TM; Iverson, T. 2022. "X-Ray Diffraction data for: Hsa Siglec and Unique domains in complex with sialyl Lewis C. PDB Code 7KMJ", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/813.
raw diffraction data
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Haley E Stubbs | Depositor | Vanderbilt University |
| T M Iverson | Data Collector | Vanderbilt University |
| Tina Iverson | PI | Vanderbilt University |
none
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97946
Sweep:
SWEEP1
Files:
/programs/datagrid/813/sa15Hsa14_11_#####.cbf
Images:
1 - 1800
Beam:
(217.32, 211.82) -> (217.32, 211.7)
Distance:
200.0 -> 208.11
Spacegroup:
P 21 21 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.75 | 4.75 | 1.75 |
| Low resolution limit | 40.37 | 40.38 | 1.78 |
| Completeness | 99.8 | 100.0 | 98.8 |
| Multiplicity | 9.6 | 11.5 | 7.7 |
| I/sigma | 2.1 | 6.2 | 0.4 |
| Rmerge | 0.431 | 0.222 | 2.193 |
| CC half | 0.963 | 0.975 | 0.493 |
| Anomalous completeness | 98.5 | 100.0 | 96.7 |
| Anomalous multiplicity | 5.1 | 5.1 | 5.1 |
| Cell | 47.08 | 59.6 | 78.43 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97946
Sweep:
SWEEP1
Files:
/programs/datagrid/813/sa15Hsa14_11_#####.cbf
Images:
1 - 1800
Beam:
(217.32, 211.82) -> (217.32, 211.73)
Distance:
200.0 -> 200.28
Spacegroup:
P 21 21 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.13 | 3.07 | 1.13 |
| Low resolution limit | 46.01 | 46.05 | 1.15 |
| Completeness | 98.8 | 100.0 | 85.0 |
| Multiplicity | 11.5 | 11.5 | 5.7 |
| I/sigma | 10.4 | 34.1 | 0.5 |
| Rmerge | 0.079 | 0.053 | 2.749 |
| CC half | 0.998 | 0.997 | 0.415 |
| Anomalous completeness | 98.3 | 99.9 | 81.2 |
| Anomalous multiplicity | 6.0 | 6.0 | 6.0 |
| Cell | 45.96 | 57.85 | 75.89 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97946
Sweep:
SWEEP1
Files:
/programs/datagrid/813/sa15Hsa14_11_#####.cbf
Images:
1 - 1800
Beam:
(217.32, 211.82) -> (217.32, 211.73)
Distance:
200.0 -> 200.4
Spacegroup:
C 2 2 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.13 | 3.07 | 1.13 |
| Low resolution limit | 46.62 | 46.66 | 1.15 |
| Completeness | 98.7 | 100.0 | 84.6 |
| Multiplicity | 11.9 | 13.0 | 5.7 |
| I/sigma | 1.9 | 19.3 | 0.0 |
| Rmerge | 0.123 | 0.075 | 6.304 |
| CC half | 0.998 | 0.997 | 0.39 |
| Anomalous completeness | 98.2 | 100.0 | 80.8 |
| Anomalous multiplicity | 6.1 | 6.1 | 6.1 |
| Cell | 91.965 | 151.893 | 57.879 | 90.0 | 90.0 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
