Data DOI: 10.15785/SBGRID/812 | ID: 812
6EF7 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Iverson Laboratory, Vanderbilt University
Release Date: Nov. 3, 2020
1. If this dataset is locally available, it should be accessable at /programs/datagrid/812
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/812 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/812 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/812 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/812 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 812 ; shasum -c files.sha'
Storage requirements: 8.5G
Biological Sample:
sialic acid binding region of serine rich repeat adhesin from Streptococcus gordonii strain M99
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
21-ID-G, LS-CAT, APS, Chicago, IL
Data Creation Date:
Dec. 17, 2015
Related Datasets:
None
Stubbs, HE; Iverson, TM; Iverson, T. 2020. "X-Ray Diffraction data for: sialic acid binding region of serine rich repeat adhesin from Streptococcus gordonii strain M99. PDB Code 6EF7", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/812.
raw x-ray diffraction data
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Haley E Stubbs | Depositor | Vanderbilt University |
| T M Iverson | Data Collector | Vanderbilt University |
| Tina Iverson | PI | Vanderbilt University |
none
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97856
Sweep:
SWEEP1
Files:
/programs/datagrid/812/046-9.###
Images:
1 - 230
Beam:
(145.15, 155.71) -> (145.15, 155.74)
Distance:
100.0 -> 99.53
Spacegroup:
P 21 21 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 0.94 | 2.55 | 0.94 |
| Low resolution limit | 25.61 | 25.61 | 0.96 |
| Completeness | 86.7 | 99.6 | 36.1 |
| Multiplicity | 8.7 | 8.5 | 4.5 |
| I/sigma | 20.8 | 55.7 | 0.8 |
| Rmerge | 0.049 | 0.025 | 1.469 |
| CC half | 0.999 | 0.998 | 0.359 |
| Anomalous completeness | 85.1 | 99.4 | 29.6 |
| Anomalous multiplicity | 4.6 | 4.6 | 4.6 |
| Cell | 33.92 | 46.21 | 72.97 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97856
Sweep:
SWEEP1
Files:
/programs/datagrid/812/046-9.###
Images:
1 - 230
Beam:
(145.15, 155.71) -> (145.15, 155.74)
Distance:
100.0 -> 99.52
Spacegroup:
P 21 21 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 0.94 | 2.55 | 0.94 |
| Low resolution limit | 46.21 | 46.27 | 0.96 |
| Completeness | 86.7 | 99.6 | 36.1 |
| Multiplicity | 8.7 | 8.5 | 4.5 |
| I/sigma | 20.8 | 55.6 | 0.8 |
| Rmerge | 0.049 | 0.025 | 1.471 |
| CC half | 0.998 | 0.998 | 0.349 |
| Anomalous completeness | 85.1 | 99.4 | 29.6 |
| Anomalous multiplicity | 4.6 | 4.6 | 4.6 |
| Cell | 33.92 | 46.21 | 72.97 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97856
Sweep:
SWEEP1
Files:
/programs/datagrid/812/046-9.###
Images:
1 - 230
Beam:
(145.15, 155.71) -> (145.15, 155.83)
Distance:
100.0 -> 99.6
Spacegroup:
P 2 21 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 0.97 | 2.63 | 0.97 |
| Low resolution limit | 72.97 | 73.18 | 0.99 |
| Completeness | 91.4 | 100.0 | 53.6 |
| Multiplicity | 8.6 | 8.8 | 5.8 |
| I/sigma | 11.7 | 43.4 | 11.0 |
| Rmerge | 0.156 | 0.032 | 0.223 |
| CC half | 0.982 | 0.986 | 0.025 |
| Anomalous completeness | 90.5 | 99.9 | 47.8 |
| Anomalous multiplicity | 4.5 | 4.5 | 4.5 |
| Cell | 33.919 | 46.209 | 72.97 | 90.0 | 90.0 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
