X-Ray Diffraction data from sialic acid binding region of serine rich repeat adhesin from Streptococcus gordonii strain M99, source of 6EF7 structure

Data DOI: 10.15785/SBGRID/812 | ID: 812

6EF7 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Iverson Laboratory, Vanderbilt University

Release Date: 3 Nov 2020

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/812

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/812 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/812 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/812 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/812 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 812 ; shasum -c files.sha'

Storage requirements: 8.5G

Biological Sample:

sialic acid binding region of serine rich repeat adhesin from Streptococcus gordonii strain M99

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

21-ID-G, LS-CAT, APS, Chicago, IL

Data Creation Date:

17 Dec 2015

Related Datasets:

None


Cite this Dataset

Stubbs, HE; Iverson, TM; Iverson, T. 2020. "X-Ray Diffraction data for: sialic acid binding region of serine rich repeat adhesin from Streptococcus gordonii strain M99. PDB Code 6EF7", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/812.

Download Citation

Dataset Description

raw x-ray diffraction data

Project Members

Name Additional Roles Affiliation While Working on the Project
Haley E StubbsDepositorVanderbilt University
T M IversonData CollectorVanderbilt University
Tina IversonPIVanderbilt University

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97856

Sweep:

SWEEP1

Files:

/programs/datagrid/812/046-9.###

Images:

1 - 230

Beam:

(145.15, 155.71) -> (145.15, 155.74)

Distance:

100.0 -> 99.53

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 0.94 2.55 0.94
Low resolution limit 25.61 25.61 0.96
Completeness 86.7 99.6 36.1
Multiplicity 8.7 8.5 4.5
I/sigma 20.8 55.7 0.8
Rmerge 0.049 0.025 1.469
CC half 0.999 0.998 0.359
Anomalous completeness 85.1 99.4 29.6
Anomalous multiplicity 4.6 4.6 4.6
Cell 33.92 46.21 72.97 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97856

Sweep:

SWEEP1

Files:

/programs/datagrid/812/046-9.###

Images:

1 - 230

Beam:

(145.15, 155.71) -> (145.15, 155.74)

Distance:

100.0 -> 99.52

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 0.94 2.55 0.94
Low resolution limit 46.21 46.27 0.96
Completeness 86.7 99.6 36.1
Multiplicity 8.7 8.5 4.5
I/sigma 20.8 55.6 0.8
Rmerge 0.049 0.025 1.471
CC half 0.998 0.998 0.349
Anomalous completeness 85.1 99.4 29.6
Anomalous multiplicity 4.6 4.6 4.6
Cell 33.92 46.21 72.97 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97856

Sweep:

SWEEP1

Files:

/programs/datagrid/812/046-9.###

Images:

1 - 230

Beam:

(145.15, 155.71) -> (145.15, 155.83)

Distance:

100.0 -> 99.6

Spacegroup:

P 2 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 0.97 2.63 0.97
Low resolution limit 72.97 73.18 0.99
Completeness 91.4 100.0 53.6
Multiplicity 8.6 8.8 5.8
I/sigma 11.7 43.4 11.0
Rmerge 0.156 0.032 0.223
CC half 0.982 0.986 0.025
Anomalous completeness 90.5 99.9 47.8
Anomalous multiplicity 4.5 4.5 4.5
Cell 33.919 46.209 72.97 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.