Data DOI: 10.15785/SBGRID/804 | ID: 804
6ZE2 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Dohnalek Laboratory, Institute of Biotechnology of the Czech Academy of Sciences
Release Date: 18 May 2021
1. If this dataset is locally available, it should be accessable at /programs/datagrid/804
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/804 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/804 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/804 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/804 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 804 ; shasum -c files.sha'
Storage requirements: 11G
Biological Sample:
FAD-dependent oxidoreductase from Chaetomium thermophilum
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
Beamline P13, Petra III, Desy, Hamburg, Germany
Data Creation Date:
21 Oct 2016
Related Datasets:
None
Svecova, L; Kolenko, P; Koval, T; Oestergaard, LH.; Skalova, T; Dohnalek, J. 2021. "X-Ray Diffraction data for: FAD-dependent oxidoreductase from Chaetomium thermophilum. PDB Code 6ZE2", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/804.
native dataset
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Leona Svecova | Data Collector, Depositor | Institute of Biotechnology of the Czech Academy of Sciences, Laboratory of Structure and Function of Biomolecules, Prumyslova 595, Vestec 25250, Czech Republic |
| Jan Dohnalek | Data Collector | Institute of Biotechnology of the Czech Academy of Sciences, Laboratory of Structure and Function of Biomolecules, Prumyslova 595, Vestec 25250, Czech Republic |
| Petr Kolenko | Data Collector | Institute of Biotechnology of the Czech Academy of Sciences, Laboratory of Structure and Function of Biomolecules, Prumyslova 595, Vestec 25250, Czech Republic |
| Tomas Koval | Data Collector | Institute of Biotechnology of the Czech Academy of Sciences, Laboratory of Structure and Function of Biomolecules, Prumyslova 595, Vestec 25250, Czech Republic |
| Lars H. Oestergaard | Data Collector | Novozymes A/S, Biologiens Vej 2, Kongen. Lyngby, 2800, Denmark |
| Tereza Skalova | Data Collector | Institute of Biotechnology of the Czech Academy of Sciences, Laboratory of Structure and Function of Biomolecules, Prumyslova 595, Vestec 25250, Czech Republic |
| Jan Dohnalek | PI | Institute of Biotechnology of the Czech Academy of Sciences |
This dataset was indexed in space group P21 and last 100 images were excluded due to radiation damage. Regions 1.90-1.92A, 2.23-2.26A,and 3.63-3.68A on the detector were omitted due to ice rings.
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.03321
Sweep:
SWEEP1
Files:
/programs/datagrid/804/L19T_w1_2_#####.cbf
Images:
1 - 1800
Beam:
(216.76, 210.27) -> (216.76, 210.15)
Distance:
141.74 -> 142.17
Spacegroup:
P 1 21 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.12 | 3.04 | 1.12 |
| Low resolution limit | 31.76 | 31.78 | 1.14 |
| Completeness | 96.9 | 96.4 | 93.9 |
| Multiplicity | 3.2 | 3.2 | 3.1 |
| I/sigma | 8.1 | 30.7 | 0.8 |
| Rmerge | 0.051 | 0.025 | 1.128 |
| CC half | 0.998 | 0.998 | 0.364 |
| Anomalous completeness | 77.6 | 80.2 | 68.5 |
| Anomalous multiplicity | 1.8 | 1.8 | 1.8 |
| Cell | 46.66 | 116.78 | 109.91 | 90.0 | 90.8 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.03321
Sweep:
SWEEP1
Files:
/programs/datagrid/804/L19T_w1_2_#####.cbf
Images:
1 - 1800
Beam:
(216.76, 210.27) -> (216.76, 210.15)
Distance:
141.74 -> 141.95
Spacegroup:
P 1 21 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.12 | 3.04 | 1.12 |
| Low resolution limit | 36.63 | 36.65 | 1.14 |
| Completeness | 96.9 | 96.4 | 93.8 |
| Multiplicity | 3.2 | 3.2 | 3.1 |
| I/sigma | 8.1 | 30.7 | 0.8 |
| Rmerge | 0.051 | 0.025 | 1.126 |
| CC half | 0.998 | 0.998 | 0.367 |
| Anomalous completeness | 77.5 | 80.2 | 68.5 |
| Anomalous multiplicity | 1.8 | 1.8 | 1.8 |
| Cell | 46.66 | 116.78 | 109.91 | 90.0 | 90.8 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.03321
Sweep:
SWEEP1
Files:
/programs/datagrid/804/L19T_w1_2_#####.cbf
Images:
1 - 1800
Beam:
(216.76, 210.27) -> (216.76, 210.15)
Distance:
141.74 -> 141.92
Spacegroup:
P 1 21 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.1 | 2.98 | 1.1 |
| Low resolution limit | 46.65 | 46.69 | 1.12 |
| Completeness | 97.9 | 99.3 | 95.2 |
| Multiplicity | 3.3 | 3.5 | 3.3 |
| I/sigma | 7.6 | 56.4 | 0.3 |
| Rmerge | 0.062 | 0.037 | 1.342 |
| CC half | 0.99 | 0.982 | 0.41 |
| Anomalous completeness | 82.3 | 93.0 | 75.8 |
| Anomalous multiplicity | 1.8 | 1.8 | 1.8 |
| Cell | 46.656 | 116.781 | 109.906 | 90.0 | 89.223 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
