X-Ray Diffraction data from Protein translocation ATPase SecA, source of 4YS0 structure

Data DOI: 10.15785/SBGRID/80 | ID: 80

Publication DOI: 10.1016/j.jmb.2015.05.003

4YS0 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Rapoport Laboratory, Harvard Medical School

Release Date: May 19, 2015

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/80

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/80 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/80 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/80 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/80 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 80 ; shasum -c files.sha'

Storage requirements: 1.4G

Biological Sample:

Protein translocation ATPase SecA

Dataset Type:

X-Ray Diffraction

Subject Composition:

Ligand, Protein

Collection Facility:

Beam 24-ID-C, NE-CAT, APS, Chicago, IL

Data Creation Date:

July 2, 2011

Related Datasets:

None


Cite this Dataset

Chen, Y; Rapoport, T. 2015. "X-Ray Diffraction data for: Protein translocation ATPase SecA. PDB Code 4YS0", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/80.

Download Citation

Dataset Description

Native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Yu ChenData Collector, DepositorHarvard Medical School
Tom RapoportPIHarvard Medical School

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97914

Sweep:

SWEEP1

Files:

/programs/datagrid/80/C3405_1_###.img

Images:

1 - 75

Beam:

(157.96, 156.52) -> (157.96, 156.12)

Distance:

250.0 -> 251.23

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.89 5.13 1.89
Low resolution limit 56.26 56.28 1.92
Completeness 98.9 95.3 99.0
Multiplicity 2.9 3.0 2.9
I/sigma 5.3 11.7 1.0
Rmerge 0.087 0.028 0.836
CC half 0.991 0.994 0.361
Anomalous completeness 90.0 94.7 88.4
Anomalous multiplicity 1.6 1.6 1.6
Cell 64.372 110.04 115.758 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97914

Sweep:

SWEEP1

Files:

/programs/datagrid/80/C3405_1_###.img

Images:

1 - 75

Beam:

(157.96, 156.52) -> (157.96, 156.03)

Distance:

250.0 -> 251.19

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.84 4.99 1.84
Low resolution limit 33.94 33.95 1.87
Completeness 99.0 95.5 99.8
Multiplicity 3.0 3.0 3.1
I/sigma 9.7 28.9 1.0
Rmerge 0.073 0.023 0.988
CC half 0.996 0.997 0.341
Anomalous completeness 90.1 90.2 92.0
Anomalous multiplicity 1.6 1.6 1.6
Cell 64.43 110.26 115.82 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97914

Sweep:

SWEEP1

Files:

/programs/datagrid/80/C3405_1_###.img

Images:

1 - 75

Beam:

(157.96, 156.52) -> (157.96, 156.03)

Distance:

250.0 -> 251.06

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.87 5.07 1.87
Low resolution limit 39.36 39.37 1.9
Completeness 65.7 55.6 70.5
Multiplicity 2.3 2.7 2.2
I/sigma 8.6 27.5 1.1
Rmerge 0.064 0.023 0.836
CC half 0.995 0.996 0.322
Anomalous completeness 45.7 43.9 48.6
Anomalous multiplicity 1.4 1.4 1.4
Cell 110.13 64.38 115.66 90.0 90.08 90.0

Version:

version unreported

Reprocessing failed.


License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.