Data DOI: 10.15785/SBGRID/80 | ID: 80
Publication DOI: 10.1016/j.jmb.2015.05.003
4YS0 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Rapoport Laboratory, Harvard Medical School
Release Date: 19 May 2015
1. If this dataset is locally available, it should be accessable at /programs/datagrid/80
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/80 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/80 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/80 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/80 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 80 ; shasum -c files.sha'
Storage requirements: 1.4G
Biological Sample:
Protein translocation ATPase SecA
Dataset Type:
X-Ray Diffraction
Subject Composition:
Ligand, Protein
Collection Facility:
Beam 24-ID-C, NE-CAT, APS, Chicago, IL
Data Creation Date:
2 Jul 2011
Related Datasets:
None
Chen, Y; Rapoport, T. 2015. "X-Ray Diffraction data for: Protein translocation ATPase SecA. PDB Code 4YS0", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/80.
Native dataset
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Yu Chen | Data Collector, Depositor | Harvard Medical School |
| Tom Rapoport | PI | Harvard Medical School |
none
Version:
version unreported
Reprocessing failed.
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97914
Sweep:
SWEEP1
Files:
/programs/datagrid/80/C3405_1_###.img
Images:
1 - 75
Beam:
(157.96, 156.52) -> (157.96, 156.03)
Distance:
250.0 -> 251.33
Spacegroup:
P 21 21 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.84 | 4.99 | 1.84 |
| Low resolution limit | 39.39 | 39.4 | 1.87 |
| Completeness | 99.1 | 95.5 | 99.8 |
| Multiplicity | 3.0 | 3.0 | 3.1 |
| I/sigma | 9.7 | 29.1 | 1.0 |
| Rmerge | 0.073 | 0.023 | 1.017 |
| CC half | 0.996 | 0.997 | 0.313 |
| Anomalous completeness | 90.1 | 90.0 | 91.8 |
| Anomalous multiplicity | 1.6 | 1.6 | 1.6 |
| Cell | 64.43 | 110.26 | 115.82 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97914
Sweep:
SWEEP1
Files:
/programs/datagrid/80/C3405_1_###.img
Images:
1 - 75
Beam:
(157.96, 156.52) -> (157.96, 156.02)
Distance:
250.0 -> 251.57
Spacegroup:
P 21 21 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.96 | 5.31 | 1.96 |
| Low resolution limit | 79.85 | 79.92 | 1.99 |
| Completeness | 99.5 | 96.0 | 98.6 |
| Multiplicity | 3.1 | 3.1 | 3.1 |
| I/sigma | 13.7 | 50.3 | 2.6 |
| Rmerge | 0.094 | 0.041 | 0.625 |
| CC half | 0.957 | 0.961 | 0.149 |
| Anomalous completeness | 93.8 | 95.9 | 92.4 |
| Anomalous multiplicity | 1.7 | 1.7 | 1.7 |
| Cell | 64.44 | 110.285 | 115.768 | 90.0 | 90.0 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
