Data DOI: 10.15785/SBGRID/793 | ID: 793
Publication DOI: 10.1038/s42003-020-01155-1
6YMB Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Zou Laboratory, Stockholm University
Release Date: 4 Aug 2020
1. If this dataset is locally available, it should be accessable at /programs/datagrid/793
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/793 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/793 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/793 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/793 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 793 ; shasum -c files.sha'
Storage requirements: 204M
Biological Sample:
Human carbonic anhydrase II
Dataset Type:
Microcrystal Electron Diffraction
Subject Composition:
Protein
Collection Facility:
JEOL JEM 2100 (LaB6)
Data Creation Date:
3 Sep 2019
Related Datasets:
None
Clabbers, MT.B.; Xu, H; Zou, X. 2020. "Microcrystal Electron Diffraction data for: Human carbonic anhydrase II. PDB Code 6YMB", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/793.
Microcrystal electron diffraction data of HCA II
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Max T.B. Clabbers | Data Collector, Depositor | Stockholm University |
| Hongyi Xu | Data Collector | Stockholm University |
| Xiaodong Zou | PI | Stockholm University |
Microcrystal electron diffraction (MicroED) can be processed using standard crystallographic software such as XDS[1], DIALS[2,3], and MOSFLM[4]. The HCA II diffraction data were processed and merged using XDS. The detector geometry is defined as following: NX=516 NY=516 QX=0.055 QY=0.055 Pixels 256-261 in both x- and y-direction were masked using: UNTRUSTED_RECTANGLE=255 262 0 517 UNTRUSTED_RECTANGLE=0 517 255 262 The essential experimental parameters are: DETECTOR_DISTANCE=1481.74 ROTATION_AXIS=-0.6204 0.7843 0.0000 OSCILLATION_RANGE=0.68 [1] Kabsch, _Acta Cryst_ D66, 125–32 (2010) [2] Winter _et al._, _Acta Cryst._ D74, 85–97 (2018) [3] Clabbers _et al._, _Acta Cryst._ D74, 506–518 (2018) [4] Leslie, _Acta Cryst._ D62, 48–57 (2006)
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
