X-Ray Diffraction data from Human Prethrombin-1, source of 3NXP structure

Data DOI: 10.15785/SBGRID/79 | ID: 79

Publication DOI: 10.1073/pnas.1010262107

3NXP Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Di Cera Laboratory, Saint Louis University

Release Date: May 11, 2015

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/79

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/79 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/79 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/79 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/79 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 79 ; shasum -c files.sha'

Storage requirements: 1.7G

Biological Sample:

Human Prethrombin-1

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

Beamline 24-ID-C, NE-CAT, APS, Chicago,IL

Data Creation Date:

April 28, 2010

Related Datasets:

None


Cite this Dataset

Chen, Z; Sukumar, N; Di Cera, E. 2015. "X-Ray Diffraction data for: Human Prethrombin-1. PDB Code 3NXP", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/79.

Download Citation

Dataset Description

This dataset is the source of PDB ID code 3NXP

Project Members

Name Additional Roles Affiliation While Working on the Project
Zhiwei ChenDepositorSaint Louis University
Narayanasami SukumarData CollectorArgonne National Laboratory
Enrico Di CeraPISaint Louis University

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97915

Sweep:

SWEEP4

Files:

/programs/datagrid/79/prethrlrr_12_top_1_###.img

Images:

82 - 96

Beam:

(157.08, 165.69) -> (157.08, 165.72)

Distance:

260.01 -> 257.5

Spacegroup:

P 21 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.98 5.37 1.98
Low resolution limit 44.71 44.72 2.01
Completeness 89.1 94.6 57.8
Multiplicity 3.1 3.5 1.5
I/sigma 7.5 19.4 1.0
Rmerge 0.093 0.04 0.417
CC half 0.994 0.996 0.555
Anomalous completeness 74.0 90.2 16.9
Anomalous multiplicity 1.8 1.8 1.8
Cell 67.68 80.81 88.1 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97915

Sweep:

SWEEP4

Files:

/programs/datagrid/79/prethrlrr_12_top_1_###.img

Images:

82 - 96

Beam:

(157.08, 165.69) -> (157.08, 165.72)

Distance:

260.01 -> 257.97

Spacegroup:

P 21 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.98 5.37 1.98
Low resolution limit 44.71 44.72 2.01
Completeness 87.4 94.6 57.9
Multiplicity 2.8 3.5 1.5
I/sigma 7.7 20.1 1.1
Rmerge 0.075 0.04 0.402
CC half 0.993 0.996 0.576
Anomalous completeness 68.1 90.2 16.8
Anomalous multiplicity 1.6 1.6 1.6
Cell 67.68 80.8 88.1 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97915

Sweep:

SWEEP4

Files:

/programs/datagrid/79/prethrlrr_12_top_1_###.img

Images:

82 - 96

Beam:

(157.08, 165.69) -> (157.08, 165.7)

Distance:

260.01 -> 258.5

Spacegroup:

P 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.21 8.68 3.21
Low resolution limit 36.95 36.95 3.27
Completeness 37.0 49.7 23.3
Multiplicity 1.4 1.8 1.1
I/sigma 1.2 1.6 0.8
Rmerge 0.554 0.338 0.0
CC half 0.112 0.208 -0.166
Anomalous completeness 10.6 30.2 2.1
Anomalous multiplicity 1.1 1.1 1.1
Cell 67.547 80.747 88.293 90.034 90.01 89.989

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.