Data DOI: 10.15785/SBGRID/79 | ID: 79
Publication DOI: 10.1073/pnas.1010262107
3NXP Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Di Cera Laboratory, Saint Louis University
Release Date: 11 May 2015
1. If this dataset is locally available, it should be accessable at /programs/datagrid/79
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/79 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/79 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/79 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/79 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 79 ; shasum -c files.sha'
Storage requirements: 1.7G
Biological Sample:
Human Prethrombin-1
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
Beamline 24-ID-C, NE-CAT, APS, Chicago,IL
Data Creation Date:
28 Apr 2010
Related Datasets:
None
Chen, Z; Sukumar, N; Di Cera, E. 2015. "X-Ray Diffraction data for: Human Prethrombin-1. PDB Code 3NXP", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/79.
This dataset is the source of PDB ID code 3NXP
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Zhiwei Chen | Depositor | Saint Louis University |
| Narayanasami Sukumar | Data Collector | Argonne National Laboratory |
| Enrico Di Cera | PI | Saint Louis University |
none
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97915
Sweep:
SWEEP4
Files:
/programs/datagrid/79/prethrlrr_12_top_1_###.img
Images:
82 - 96
Beam:
(157.08, 165.69) -> (157.08, 165.72)
Distance:
260.01 -> 257.57
Spacegroup:
P 21 21 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.83 | 4.97 | 1.83 |
| Low resolution limit | 44.71 | 44.72 | 1.86 |
| Completeness | 90.1 | 95.2 | 57.2 |
| Multiplicity | 3.1 | 3.5 | 1.5 |
| I/sigma | 6.1 | 19.8 | 0.4 |
| Rmerge | 0.11 | 0.041 | 1.172 |
| CC half | 0.993 | 0.996 | 0.208 |
| Anomalous completeness | 75.6 | 89.9 | 14.5 |
| Anomalous multiplicity | 1.8 | 1.8 | 1.8 |
| Cell | 67.68 | 80.81 | 88.1 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97915
Sweep:
SWEEP4
Files:
/programs/datagrid/79/prethrlrr_12_top_1_###.img
Images:
82 - 96
Beam:
(157.08, 165.69) -> (157.08, 165.72)
Distance:
260.01 -> 258.01
Spacegroup:
P 21 21 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.83 | 4.97 | 1.83 |
| Low resolution limit | 44.71 | 44.72 | 1.86 |
| Completeness | 89.6 | 95.2 | 57.2 |
| Multiplicity | 3.1 | 3.5 | 1.5 |
| I/sigma | 6.1 | 19.8 | 0.4 |
| Rmerge | 0.108 | 0.041 | 1.15 |
| CC half | 0.993 | 0.996 | 0.211 |
| Anomalous completeness | 74.7 | 90.0 | 14.5 |
| Anomalous multiplicity | 1.8 | 1.8 | 1.8 |
| Cell | 67.68 | 80.8 | 88.1 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97915
Sweep:
SWEEP4
Files:
/programs/datagrid/79/prethrlrr_12_top_1_###.img
Images:
82 - 96
Beam:
(157.08, 165.69) -> (157.08, 165.7)
Distance:
260.01 -> 258.19
Spacegroup:
P 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.39 | 3.76 | 1.39 |
| Low resolution limit | 80.75 | 80.89 | 1.41 |
| Completeness | 40.8 | 56.7 | 0.6 |
| Multiplicity | 1.4 | 1.7 | 1.0 |
| I/sigma | 4.1 | 12.3 | 17.7 |
| Rmerge | 1.443 | 0.242 | 0.0 |
| CC half | 0.056 | 0.661 | 0.0 |
| Anomalous completeness | 9.6 | 29.2 | 0.0 |
| Anomalous multiplicity | 1.1 | 1.1 | 1.1 |
| Cell | 67.494 | 80.75 | 88.323 | 90.036 | 90.079 | 89.972 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
