Maintance Thur 2026 Nov 12

The SBDB will be undergoing infrastructure maintance Thur 2026 Nov 12 between 10AM and 6PM ET. Dataset registrations, dataset depositions, and dataset downloads from the primary location will be unavailable; API access will also be impacted.

X-Ray Diffraction data from Hsa Siglec and Unique domains in complex with 6S-sialy-Lewisx, source of structure

dataset logo thumbnail

Data DOI: 10.15785/SBGRID/787 | ID: 787

Iverson Laboratory, Vanderbilt University

Release Date: 4 Jan 2022

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/787

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/787 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/787 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/787 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/787 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 787 ; shasum -c files.sha'

Storage requirements: 11G

Biological Sample:

Hsa Siglec and Unique domains in complex with 6S-sialy-Lewisx

Dataset Type:

X-Ray Diffraction

Subject Composition:

Ligand, Protein

Collection Facility:

SSRL 9-2

Data Creation Date:

21 Nov 2019

Related Datasets:

None


Cite this Dataset

Stubbs, HE; Loukachevitch, LV; Iverson, T. 2022. "X-Ray Diffraction data for: Hsa Siglec and Unique domains in complex with 6S-sialy-Lewisx.", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/787.

Download Citation

Dataset Description

Hsa Siglec and Unique domains in complex with 6S-sialy-Lewisx

Project Members

Name Additional Roles Affiliation While Working on the Project
Haley E StubbsDepositorVanderbilt University
Lioudmila V LoukachevitchData CollectorVanderbilt University
Tina IversonPIVanderbilt University

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

xia2 -2d

xia2 -3d

xia2 -3dii

xia2 -dials
/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=3d /programs/datagrid//787/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=3dii /programs/datagrid//787/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97946

Sweep:

SWEEP1

Files:

/programs/datagrid/787/sa16Hsa26_15_#####.cbf

Images:

1 - 1800

Beam:

(217.32, 211.82) -> (217.32, 211.62)

Distance:

250.0 -> 255.88

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.8 4.88 1.8
Low resolution limit 36.89 36.9 1.83
Completeness 99.2 100.0 99.7
Multiplicity 12.3 10.9 12.6
I/sigma 5.9 27.3 -0.3
Rmerge 0.231 0.059 -9.561
CC half 0.998 0.997 0.177
Anomalous completeness 97.5 99.5 99.4
Anomalous multiplicity 6.6 6.6 6.6
Cell 47.78 58.04 76.01 90.0 90.0 90.0
/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=dials /programs/datagrid//787/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.


License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.