Maintance Notification for 2020 July 24

The SBDB will be operating at a reduced level due to underlying network maintenance, starting July 24. New dataset registrations, deposition credential requests, dataset uploads, and dataset downloads from HMS will be unavailable during this time. Local access and downloads from other DAA sites will be unaffected. We expect to return to full operations July 25 or earlier.

X-Ray Diffraction data from Globin sensor domain of AfGcHK in complex with cyanide, partially reduced, source of 5OHF structure

Data DOI: 10.15785/SBGRID/777 | ID: 777

Publication DOI: 10.1074/jbc.M117.817023

5OHF Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Dohnalek Laboratory, Institute of Biotechnology of the Czech Academy of Sciences

Release Date: April 21, 2020

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/777

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/777 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/777 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/777 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/777 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 777 ; shasum -c files.sha'

Storage requirements: 21G

Biological Sample:

Globin sensor domain of AfGcHK in complex with cyanide, partially reduced

Dataset Type:

X-Ray Diffraction

Subject Composition:

Ligand, Protein

Collection Facility:

Petra III, beam line PX 13

Data Creation Date:

Sept. 11, 2015

Related Datasets:

None


Cite this Dataset

Skalova, T; Kolenko, P; Martinkova, M; Stranava, M; Dohnalek, J. 2020. "X-Ray Diffraction data for: Globin sensor domain of AfGcHK in complex with cyanide, partially reduced. PDB Code 5OHF", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/777.

Download Citation

Dataset Description

native data set

Project Members

Name Additional Roles Affiliation While Working on the Project
Tereza SkalovaData Collector, DepositorInstitute of Biotechnology of the Czech Academy of Sciences, v.v.i., Prumyslova 595, 252 50, Vestec, Czech Republic
Jan DohnalekData CollectorInstitute of Biotechnology of the Czech Academy of Sciences, v.v.i., Prumyslova 595, 252 50, Vestec, Czech Republic
Petr KolenkoData CollectorFNSPE, Czech Technical University in Prague, Brehova 7, Prague 1, 115 19 Czech Republic
Marketa MartinkovaData CollectorDepartment of Biochemistry, Faculty of Science, Charles University Prague, Hlavova 8, 128 40 Praha, Czech Republic
Martin StranavaData CollectorDepartment of Biochemistry, Faculty of Science, Charles University Prague, Hlavova 8, 128 40 Praha, Czech Republic
Jan DohnalekPIInstitute of Biotechnology of the Czech Academy of Sciences

Reprocessing Instructions

use images 1-2000


License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.