Data DOI: 10.15785/SBGRID/777 | ID: 777
Publication DOI: 10.1074/jbc.M117.817023
5OHF Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Dohnalek Laboratory, Institute of Biotechnology of the Czech Academy of Sciences
Release Date: 21 Apr 2020
1. If this dataset is locally available, it should be accessable at /programs/datagrid/777
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/777 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/777 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/777 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/777 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 777 ; shasum -c files.sha'
Storage requirements: 21G
Biological Sample:
Globin sensor domain of AfGcHK in complex with cyanide, partially reduced
Dataset Type:
X-Ray Diffraction
Subject Composition:
Ligand, Protein
Collection Facility:
Petra III, beam line PX 13
Data Creation Date:
11 Sep 2015
Related Datasets:
None
Skalova, T; Kolenko, P; Martinkova, M; Stranava, M; Dohnalek, J. 2020. "X-Ray Diffraction data for: Globin sensor domain of AfGcHK in complex with cyanide, partially reduced. PDB Code 5OHF", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/777.
native data set
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Tereza Skalova | Data Collector, Depositor | Institute of Biotechnology of the Czech Academy of Sciences, v.v.i., Prumyslova 595, 252 50, Vestec, Czech Republic |
| Jan Dohnalek | Data Collector | Institute of Biotechnology of the Czech Academy of Sciences, v.v.i., Prumyslova 595, 252 50, Vestec, Czech Republic |
| Petr Kolenko | Data Collector | FNSPE, Czech Technical University in Prague, Brehova 7, Prague 1, 115 19 Czech Republic |
| Marketa Martinkova | Data Collector | Department of Biochemistry, Faculty of Science, Charles University Prague, Hlavova 8, 128 40 Praha, Czech Republic |
| Martin Stranava | Data Collector | Department of Biochemistry, Faculty of Science, Charles University Prague, Hlavova 8, 128 40 Praha, Czech Republic |
| Jan Dohnalek | PI | Institute of Biotechnology of the Czech Academy of Sciences |
use images 1-2000
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9201
Sweep:
SWEEP1
Files:
/programs/datagrid/777/h42_go_w1_1_#####.cbf
Images:
1 - 3600
Beam:
(216.16, 213.52) -> (216.16, 212.23)
Distance:
369.12 -> 371.33
Spacegroup:
C 2 2 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.63 | 4.42 | 1.63 |
| Low resolution limit | 41.52 | 41.53 | 1.66 |
| Completeness | 99.3 | 98.6 | 93.0 |
| Multiplicity | 6.1 | 5.7 | 3.6 |
| I/sigma | 11.5 | 23.1 | 1.1 |
| Rmerge | 0.076 | 0.065 | 0.983 |
| CC half | 0.994 | 0.99 | 0.321 |
| Anomalous completeness | 97.0 | 93.4 | 82.3 |
| Anomalous multiplicity | 3.2 | 3.2 | 3.2 |
| Cell | 77.72 | 316.64 | 77.79 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9201
Sweep:
SWEEP1
Files:
/programs/datagrid/777/h42_go_w1_1_#####.cbf
Images:
1 - 3600
Beam:
(216.16, 213.52) -> (216.16, 212.68)
Distance:
369.12 -> 374.9
Spacegroup:
P 4 2 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.63 | 4.42 | 1.63 |
| Low resolution limit | 71.55 | 71.62 | 1.66 |
| Completeness | 99.9 | 99.6 | 100.0 |
| Multiplicity | 11.8 | 11.0 | 6.5 |
| I/sigma | 6.8 | 10.2 | 1.2 |
| Rmerge | 0.227 | 0.215 | 1.305 |
| CC half | 0.979 | 0.966 | 0.327 |
| Anomalous completeness | 99.9 | 99.6 | 99.0 |
| Anomalous multiplicity | 6.3 | 6.3 | 6.3 |
| Cell | 78.02 | 78.02 | 179.44 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9201
Sweep:
SWEEP1
Files:
/programs/datagrid/777/h42_go_w1_1_#####.cbf
Images:
1 - 3600
Beam:
(216.16, 213.52) -> (216.16, 212.29)
Distance:
369.12 -> 369.93
Spacegroup:
P 4 21 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.57 | 4.26 | 1.57 |
| Low resolution limit | 76.63 | 76.72 | 1.6 |
| Completeness | 100.0 | 100.0 | 99.4 |
| Multiplicity | 11.5 | 11.6 | 5.0 |
| I/sigma | 7.3 | 35.2 | 0.1 |
| Rmerge | 0.11 | 0.08 | 1.389 |
| CC half | 0.988 | 0.979 | 0.325 |
| Anomalous completeness | 99.7 | 100.0 | 96.4 |
| Anomalous multiplicity | 6.1 | 6.1 | 6.1 |
| Cell | 77.81 | 77.81 | 441.675 | 90.0 | 90.0 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
